Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 1e-15 seq14 95.1 1e-14 seq6 86.0 6e-12 >seq12 Length=28800575 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| |||||||| ||||| |||||||| || || ||||| | || || Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || |||||||||||| |||| ||||| |||||||| || || ||||| || || || Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || |||| | || | ||||| | | ||||| |||| || | ||||| Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14046405 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | || || || || || ||||| Sbjct 14046404 CCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| |||||||| ||||| |||||||| || || |||| | || || Sbjct 14035544 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 14035485 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || |||||||||||| |||| || || |||||||| || || ||||| || || || Sbjct 14035484 AGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14035425 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| |||| | || | ||||| | | ||||| || | || | ||||| Sbjct 14035424 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 14035365 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || ||||| || || ||||| Sbjct 14035364 CCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| |||||||| ||||| |||||||| || || |||| | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||||||||| |||| ||||| |||||||| || || ||||| || || || Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || |||| | || | ||||| | | ||||| |||| || | ||||| Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | || || || || || ||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 >seq14 Length=24379743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||| || || |||| |||||||| || || ||||||||||| || |||| || | Sbjct 11039430 CGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 11039371 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || ||||| || |||||| |||| ||||| ||||| || ||||| || ||||| || Sbjct 11039370 -TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTT 11039312 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| || | | || | ||||| | | || || || | ||| | Sbjct 11039311 GTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAAGTGAT 11039252 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| || || || || || ||||| Sbjct 11039251 CGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 >seq6 Length=44357769 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | || | ||||| ||||| |||||||| ||||| |||||| Sbjct 21860751 CCTCCACGGAGGCGGAGCACCAGATGAAGAGTAGACTCTTTTTGGATGTTATAATCGGCG 21860810 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| || ||||| || || || |||||||||| ||||| || || || Sbjct 21860811 AGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGA 21860870 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || || | | || | |||||||| | || || Sbjct 21860871 ATACCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACC 21860930 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 21860931 TCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21860977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506760506201520