Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 190 3e-43 seq67 127 3e-24 >seq3 Length=60060032 Score = 190 bits (210), Expect = 3e-43 Identities = 404/587 (69%), Gaps = 21/587 (4%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| | || | | | ||||| |||||||| ||||| |||||||| | Sbjct 42480364 TGTTCCCCATCCGCTACCCTCCGGTGTGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCT 42480305 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGG---AGACTCGTTTGA 125112 |||| | ||| ||||||||||| |||| || || | | ||| | || | | Sbjct 42480304 GGACCGCCGAGGAGGTCGATCTCTCCAGCGATCTCCCCCACTGGCTCCACACCCTCACCA 42480245 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | || || || ||||| | |||||||| |||| |||||| || | Sbjct 42480244 CCGAC---GAGCGCCACTTCATCTCCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCA 42480188 Query 125173 TCGTCAACGACAATCT-GTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | | | || ||| | || || | || || |||| || Sbjct 42480187 TCGTCCTCGAGAACCTCGCCGTC-CGCTTCATGTCCGACGTCCAG-ATCCCCGAGGC-TC 42480131 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||||||| || |||||| | ||||| || |||||||| | Sbjct 42480130 GCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATTCACTCCGAGATGTACTCCCTCC 42480071 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG--CTCTTTAACGCAATCGA 125347 | | || ||||| |||||| | || ||| | || || ||| ||| |||| Sbjct 42480070 TCCTCGAATCCTACATCAAGGATCCGGA-CGAAAA-AGATCGCCTTTTTCGCGCCGTCGA 42480013 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 || || ||| | | || ||||| ||||||| | ||||||||||| | | | Sbjct 42480012 GACCGTCCCGGCGGTGACAAAGAAGGCCCAATGGGCCCTCCGGTGGATCGAGTCCTCCGA 42479953 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||||| |||||| | || || ||||| |||||||| ||||| |||||||| || || Sbjct 42479952 GTCTTT---CGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGG 42479896 Query 125468 -TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACA 125526 | || ||| ||||||| |||||||||||||| || |||||||| || || || | Sbjct 42479895 CTCCTTCTGCT-CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCT 42479837 Query 125527 GTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || ||||| ||||||||||| ||||| ||||| ||| Sbjct 42479836 CCAACGAGCTCATCTCTCGCGACGAGGGCCTCCACTGCGACTTCGCC 42479790 >seq67 Length=1088699 Score = 127 bits (140), Expect = 3e-24 Identities = 386/582 (66%), Gaps = 11/582 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| |||| | | | ||||| |||||||| ||||| |||||||| | Sbjct 292548 TGTTCCCCATCCGGTACCCCCAGGTGTGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCT 292489 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG-ACTCGTTTGACT 125114 |||| | ||| |||||||| || ||| ||||| | | ||| || | | | Sbjct 292488 GGACCGCCGAGGAGGTCGACCTCTCCGCCGACCTCCCCCACTGGCTCCACACCCTCACCC 292429 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | | || ||||| |||| |||||| || ||| Sbjct 292428 CCGAC-GAGCGCCACTTCATCTCCCACGTCCTTGCTTTCTTCGCCGCCTCCGACGGCATC 292370 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||| ||| || || | || ||| | || || | ||| | |||| ||| | Sbjct 292369 GTCCTCGAGAACCTCGCCGCCCGCTTCATGTCCGACGTCCAG-ATTGCCGAGGC-TCGCG 292312 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||| ||||| || || || ||| | ||||| || ||||| ||| || Sbjct 292311 CCTTCTACGGCTTCCAGATAGCCATCGAAAACATCCACTCCGAGATGTATTCTCTTTTGC 292252 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGG 125352 | || ||||| || || | ||| || || ||| || |||| |||| Sbjct 292251 TGGAATCCTACATCAAAGACCCTGACGAAAAAGACCGCCTTTTTCGTGCTGTCGAGACGG 292192 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | ||| | | || ||||| || |||| | | | |||||| || | | | | || Sbjct 292191 TCCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCAGTGGATTGA-GTCCTCG-GACTC 292134 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGT 125471 | | ||| || | || ||||| ||| | || || ||||| |||||||| || || | | Sbjct 292133 CTT-CGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCT 292075 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | || ||||||| ||||||||||||||||| |||||||| || ||||| | ||| Sbjct 292074 TCTGTT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAAC 292016 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 ||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 292015 GAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 291974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740688105342360