Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 1e-14 seq12 93.3 4e-14 >seq17 Length=6372654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || || | || | ||||| |||||| Sbjct 622388 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTGC 622329 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| || || Sbjct 622328 TTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 622269 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || |||| ||||||| ||||| || || || || || ||| Sbjct 622268 GCCTTGACGTTCTCGATTGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTG 622209 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTG 48730 || |||||||| || |||||||| ||| Sbjct 622208 AGGGTTTTCACGAAGATCTGCATGGTG 622182 >seq12 Length=28800575 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || ||||||||||||||||| || |||| | ||| | |||||| Sbjct 14046584 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 14046525 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| ||||| | | || | |||||||||||| || | | ||||| ||| Sbjct 14046524 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 14046465 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| |||| ||| ||| | || ||||| || Sbjct 14046464 ATCTTAGCCTTTACATTGTCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14046405 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| ||||| |||||||| |||||||| Sbjct 14046404 CCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| ||||||||| |||||||| || |||| ||| | ||||| ||||| Sbjct 14046807 ATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCCGCCAGGGTACGCCCATCCTCAAGCTG 14046748 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| | | ||||||||| || | | |||||||||| || || Sbjct 14046747 CTTCCCGGCAAAAATAAGCCTCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTT 14046688 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | ||||| || | |||| || | || ||||| || || || Sbjct 14046687 GGCCTTGACATTATCAATGGTGTCCGAGCTCTCCACTTCCAGAGTGATGGTCTTCCCAGT 14046628 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||||||||||||| Sbjct 14046627 CAGGGTCTTCACAAAAATCTGCATC 14046603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || |||||||| || ||||||||||||||||| || ||||| ||| | |||||| Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||| ||||| | | || | ||||||||||||| || | | ||||| ||| Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||| | | | ||||| || | ||| ||| | || ||||| || Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421045526866061