Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16 114 7e-21 seq7 109 3e-19 seq13 107 1e-18 seq2 107 1e-18 seq8 105 3e-18 seq4 104 1e-17 seq3 104 1e-17 seq2125 102 4e-17 >seq16 Length=21371083 Score = 114 bits (126), Expect = 7e-21 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||||| || ||||||||| | ||||||||| | | |||||||| |||||||||| Sbjct 8602346 AATATAAAA--AATAAAAAAATTATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 8602289 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||| ||||| Sbjct 8602288 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 8602248 >seq7 Length=43454766 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| |||||| || |||||||||| | | |||||||| |||||||||||||||||| Sbjct 20284711 AATCAAAAATTTAAGTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 20284652 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||| ||||||||||||||| ||||| Sbjct 20284651 CACGACGCTCTAACCAACTGAGCTAATAGGCCG 20284619 Score = 107 bits (118), Expect = 1e-18 Identities = 78/91 (86%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| || |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 3556001 TTAAAAAAATCTCTTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 3556060 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 3556061 ACGACGCTCTAACCAACTGAGCTAATAGGCC 3556091 >seq13 Length=27817470 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 23348845 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 23348904 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 23348905 CAACTGAGCTAATAGGCC 23348922 >seq2 Length=65558141 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2519148 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2519207 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 2519208 CTGAGCTAATAGGCCG 2519223 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||| | |||||||||||||||||||| ||||||||||||||| |||| Sbjct 23387012 TCGAACCTGTGACCTACCCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 23387070 >seq8 Length=40195399 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 20755338 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 20755397 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 20755398 CTGAGCTAATAGGCC 20755412 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9822986 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9822927 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 9822926 TGAGCTAATAGGCC 9822913 >seq4 Length=57251647 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7310655 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7310596 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7310595 TGAGCTAATAGGCC 7310582 >seq3 Length=60060032 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 29362467 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 29362408 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 29362407 TGAGCTAATAGGCC 29362394 >seq2125 Length=72462 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| ||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 9442 TTGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 9383 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 9382 CTGAGCTAATAGGCC 9368 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261363528637636