Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq229 156 7e-34 seq2 152 8e-33 seq16 149 1e-31 seq5 147 3e-31 seq8 140 5e-29 seq12 127 3e-25 seq14 111 2e-20 >seq229 Length=650724 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| |||||||| || |||||||| || || Sbjct 592578 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCTATCCGCCGCCTGGCTCGCCGCGGC 592519 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || | |||| || |||| |||| ||| | ||||||||| Sbjct 592518 GGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGATCTTC 592459 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | || || || ||| |||||||||||| || ||||||||| Sbjct 592458 CTCGAGAACGTCATACGCGACGCCGTCACCTACACCGAGCACGCTCGCCGCAAGACTGTC 592399 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| ||||||| || | || || || ||||||| | ||||| ||||| Sbjct 592398 ACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGCTTTGG 592340 Score = 80.6 bits (88), Expect = 4e-11 Identities = 94/127 (74%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 ||||||||||| ||| ||| |||| || || || ||| |||||||| || || | Sbjct 563776 AGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCATGCCCGCCGCA 563717 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 |||| |||||| ||||||| ||||||| || | || || || ||||||| | |||| Sbjct 563716 AGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATG 563657 Query 16686 GTTTTGG 16692 | ||||| Sbjct 563656 GCTTTGG 563650 >seq2 Length=65558141 Score = 152 bits (168), Expect = 8e-33 Identities = 192/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| ||||||||||| || ||||| ||||| || || Sbjct 54453911 GCCAAGCGGCATCGCAAGGTC-CTTCGGGATAACATCCAGGGTATCACGAAGCCTGCCAT 54453853 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 54453852 CCGCCGCCTGGCCCGCCGAGGCGGCGTCAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 54453793 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | |||||||||||| ||| ||| |||| ||||| || ||||||||| Sbjct 54453792 TCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGATGCCGTCACCTATACCGA 54453733 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 54453732 GCACGCCCGCCGGAAGACGGTCACCGCCATGGACGTTGTCTACGCCCTTAAGCGCCAGGG 54453673 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 54453672 CCGCACCCTCTACGGCTTTGG 54453652 Score = 134 bits (148), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 46995452 GCGAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCTGCCAT 46995510 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || || ||||| || || | |||| || |||| Sbjct 46995511 CCGGCGTCTCGCACGGCGTGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 46995570 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 46995571 GAGAGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCTGTCACCTACACCGA 46995630 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 46995631 GCACGCCCGCCGGAAGACGGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 46995690 Query 16672 CCG 16674 ||| Sbjct 46995691 CCG 46995693 Score = 134 bits (148), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 47025844 GCAAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 47025786 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| || |||||| || || | |||| || |||| Sbjct 47025785 CCGGCGTCTCGCACGGCGTGGTGGCGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGAC 47025726 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| |||||||| || || || ||| || || Sbjct 47025725 AAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTTATCCGCGACGCCGTCACCTACACGGA 47025666 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 47025665 GCACGCTCGCCGGAAGACCGTCACCGCCATGGACGTTGTCTACGCTCTCAAGCGCCAGGG 47025606 Query 16672 CCG 16674 ||| Sbjct 47025605 CCG 47025603 >seq16 Length=21371083 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||||||||| || ||| Sbjct 5245377 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 5245436 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || |||||||| ||||| || ||||| || || | |||| || |||| | Sbjct 5245437 CGCCGCCTTGCTCGTCGAGGTGGCGTGAAGCGGATCAGCGGCCTCATCTACGAGGAGACT 5245496 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || ||| || |||||||||| Sbjct 5245497 CGGGGGGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCTGTCACCTATACCGAG 5245556 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| |||||||| |||| || || | || || || || Sbjct 5245557 CACGCTCGCCGGAAGACCGTCACGGCCATGGATGTCGTGTACGCTCTCAAGCGCCAGGGT 5245616 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 5245617 CGCACTCTCTATGGCTTCGG 5245636 >seq5 Length=51955539 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | || || || ||||||||||| || ||||| |||||||| | Sbjct 2971012 CGCAAAGCGGCATCGCAAGGTC-CTCCGGGATAACATCCAGGGGATCACGAAGCCAGCGA 2970954 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| | || ||||| || ||||| || ||| ||| |||| || |||| Sbjct 2970953 TCCGGCGTTTGGCGAGGCGGGGTGGGGTGAAGCGGATCAGTGGCTTGATCTACGAGGAGA 2970894 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | |||| | ||||||||| | ||| || |||| || || || ||| |||| Sbjct 2970893 CCAGGGGTGTTCTCAAGATCTTCTTGGAGAATGTGATCCGGGACGCCGTCACCTACACCG 2970834 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || |||||||||||| ||||||| ||||||| || | || | || | Sbjct 2970833 AGCACGCCCGCCGGAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGG 2970774 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | | ||||| || || |||| Sbjct 2970773 GCCGGACACTCTATGGATTCGGTGGTTA 2970746 >seq8 Length=40195399 Score = 140 bits (154), Expect = 5e-29 Identities = 180/246 (73%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 30828729 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCGA 30828787 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| | ||||| || || ||||| || || | |||| ||||||| Sbjct 30828788 TCCGGCGTCTGGCGAGGCGTGGCGGCGTGAAGCGCATCAGCGGTCTCATCTACGAAGAGA 30828847 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | || | ||||||||||| ||| ||| |||| ||||| || ||| || | Sbjct 30828848 CGAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGATGCCGTCACCTACACGG 30828907 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| |||| ||||| | || ||||| | Sbjct 30828908 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTATGCCCTCAAGCGTCAGG 30828967 Query 16671 GCCGTA 16676 |||||| Sbjct 30828968 GCCGTA 30828973 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || ||||| || |||||||| || ||||||||||| || || Sbjct 30847162 GCGAAGCGTCACCGGAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 30847220 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| | ||||| || || ||||| || || | |||| || |||| Sbjct 30847221 CCGGCGTCTGGCGAGGCGTGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 30847280 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 30847281 GAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 30847340 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| ||||||| || | || || || || Sbjct 30847341 GCACGCCCGCCGGAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 30847400 Query 16672 CCG 16674 ||| Sbjct 30847401 CCG 30847403 Score = 107 bits (118), Expect = 3e-19 Identities = 171/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || ||||| || |||||||| || || || ||||| || || Sbjct 30861111 GCGAAGCGTCACCGGAAGGTC-CTTCGCGACAACATCCAGGGCATTACGAAGCCCGCGAT 30861053 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| || || ||||| || || | |||| || |||| Sbjct 30861052 CCGGCGCCTGGCGAGGCGTGGCGGTGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 30860993 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || || || || Sbjct 30860992 GAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACGTACACGGA 30860933 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| |||||| ||||||| ||||||| || | || ||||| || Sbjct 30860932 GCACGCCCGCAGGAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGTCAGGG 30860873 Query 16672 CCG 16674 ||| Sbjct 30860872 CCG 30860870 >seq12 Length=28800575 Score = 127 bits (140), Expect = 3e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || || ||||| || ||||||||||| || ||| Sbjct 21062708 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAATATCCAGGGCATCACCAAGCCGGCGATC 21062649 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || || ||||| || ||||| || ||| | |||| || |||| Sbjct 21062648 CGCCGCCTCGCCCGCCGCGGTGGCGTGAAGCGGATCAGTGGCCTTATCTACGAGGAGACC 21062589 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| || | || || || ||| |||||| Sbjct 21062588 CGGGGAGTCCTCAAGATCTTCCTCGAGAACGTCATTCGCGACGCCGTCACCTACACCGAG 21062529 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| | ||||| || | || ||||||||| Sbjct 21062528 CACGCCCGCCGGAAGACCGTCACCGCCATGGACGTTGTCTACGCCCTCAAGCGTCAAGGC 21062469 >seq14 Length=24379743 Score = 111 bits (122), Expect = 2e-20 Identities = 187/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || ||||||||||| || ||||| ||||| || | Sbjct 254968 CGCGAAGCGGCACCGTAAGGTC-CTCCGGGATAACATCCAGGGGATCACGAAGCCGGCGA 255026 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| | | || || || ||||| || || ||| |||| || |||| Sbjct 255027 TCCGGCGTTTGGCGAGGAGAGGAGGGGTGAAGCGGATCAGCGGCTTGATCTACGAGGAGA 255086 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | ||| | ||||| ||| | ||| || |||| ||||| || || |||| Sbjct 255087 CCAGGGGAGTTCTCAAGATATTCTTGGAGAATGTGATCCGAGATGCCGTCACATACACCG 255146 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| | |||||||| | || | || | Sbjct 255147 AGCACGCCCGTCGGAAGACCGTCACCGCCATGGACGTGGTCTATGCCCTCAAGAGGCAGG 255206 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | ||||||| || || |||| Sbjct 255207 GCCGGACACTTTATGGATTCGGTGGTTA 255234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79038571947273