Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq40061 556 4e-154 seq1 109 2e-19 >seq40061 Length=156973 Score = 556 bits (616), Expect = 4e-154 Identities = 715/978 (73%), Gaps = 6/978 (1%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 1128 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCT 1069 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || || || ||||||| || || || || || |||||| Sbjct 1068 ACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGAT 1009 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||| |||||||| || || || | || |||||||||||||| ||| Sbjct 1008 ATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCT 949 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || || |||| ||||||||||| |||||||| Sbjct 948 GGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGC- 890 Query 19539 GGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597 |||| || | ||||||||||||||||| |||||||| ||| | || |||| | ||||| Sbjct 889 GGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 830 Query 19598 CTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAAT 19657 |||| | || ||||| ||| ||| | |||||||||| || | | | || || Sbjct 829 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTAT 770 Query 19658 GAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCT 19717 | | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 769 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCT 711 Query 19718 CGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTA 19776 | | ||||| |||| ||||| ||||| ||||||||||||| | || || ||||||| Sbjct 710 TGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 651 Query 19777 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACA 19836 |||| ||||| ||| | |||||||| || |||||||| |||||||||||||| || |||| Sbjct 650 CTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACA 591 Query 19837 TGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGG 19896 || | ||||| ||||| |||||||| || || || ||| ||||||||| || |||| Sbjct 590 TGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 531 Query 19897 TTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGT 19956 | || || | |||| |||||| ||||| | | ||| || || || | | Sbjct 530 TAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGAT 471 Query 19957 TCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGA 20016 |||| ||||| ||||| || |||||||| || ||||| || || || ||||| |||||| Sbjct 470 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 411 Query 20017 TATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCC 20076 | || ||||||||| |||||| ||||||||||| ||||||||||| | ||| ||| | Sbjct 410 TCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGC 351 Query 20077 CCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATG 20136 | || || || || ||| | || | | || || | ||||||||||||||||| |||| Sbjct 350 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATG 291 Query 20137 GTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGATAATCCCAACATGGGCT 20195 |||| || || ||||| || |||||||| ||| | || | ||| || |||||| Sbjct 290 GTTTCAATTTCAACCAATCTGTAGTTGACAGTC-AGGGTCGTGTTATCAACACTTGGGCT 232 Query 20196 GATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAAC 20255 ||| | | ||| | |||||||| || | ||||| ||||| || || |||||||| ||| Sbjct 231 GATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAAC 172 Query 20256 TTCCCACTTGATTTAGCT 20273 ||||| || || ||||| Sbjct 171 TTCCCTCTAGACCTAGCT 154 >seq1 Length=68435666 Score = 109 bits (120), Expect = 2e-19 Identities = 191/274 (70%), Gaps = 3/274 (1%) Strand=Plus/Plus Query 20001 TACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTC 20060 || ||||| ||||||| || ||||| || |||||| ||||||| || ||||||||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 20061 TTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATG 20120 || | ||| || || || || | || ||| | || | | | || | |||||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 20121 GCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGA-TGTCAACGGAAAGAT 20179 |||| ||||| |||| ||| || || ||||| || |||||||| |||| | | | Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTG-T 3686641 Query 20180 AATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGA 20239 ||| || ||| ||||| | | ||| | ||||| || || | ||||| ||||| || Sbjct 3686642 TATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGA 3686701 Query 20240 GCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 || |||||||| |||||| | || || ||||| Sbjct 3686702 ACGTAATGCTCACAACTTCTCTCTAGACCTAGCT 3686735 Score = 96.9 bits (106), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970 ||||||||||| ||| | ||| || || | || || | ||| | |||| || Sbjct 30150006 ATCAAGGAAACCACTAAAAATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGAC 30150065 Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 || || |||||||||| | ||| || || | ||||| ||||| || | | ||||||| Sbjct 30150066 GAAACTCATAATATTGTAGGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCT 30150125 Query 20031 TCTTTCAATAATTCTCGTT-CTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCAT 20089 |||||| |||||| ||| ||| |||||| ||| | ||| ||| | | || || || Sbjct 30150126 AGTTTCAACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTAT 30150185 Query 20090 ATGGCTTACCT-CCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTA 20148 | | |||||| | | | ||| | |||||| |||| ||||| |||||||| || | | Sbjct 30150186 CTAG-TTACCTGCTTTACGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCA 30150244 Query 20149 ACCA 20152 |||| Sbjct 30150245 ACCA 30150248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144372885610116