Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq40061 527 1e-144 seq1 111 3e-19 >seq40061 Length=156973 Score = 527 bits (584), Expect = 1e-144 Identities = 715/989 (72%), Gaps = 12/989 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 |||||| ||||| |||| || | ||| | | || |||| ||||| |||||| | Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 211630 ATGATCCCATGTCTTCTAG-CTGCAACAAC---ATGCTTTATCGTAGCATTCATCGCAGC 211685 |||||||| | ||| | | | ||||| | || | |||||| | ||||| || || Sbjct 1077 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTCATTATCG---CCTTCATTGCTGC 1022 Query 211686 ACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAA 211745 ||||| || ||||| || || || ||||||||||| ||||||| | | ||||| || Sbjct 1021 TCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAA 962 Query 211746 CAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCC 211805 ||| || ||||||||||| || |||| |||| || |||||||| || || ||||| Sbjct 961 CAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCC 902 Query 211806 TATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGT 211865 || |||||||| ||| || ||||||||||| | |||||||| |||||||| || | | Sbjct 901 GATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAAT 842 Query 211866 AATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATA 211925 | | |||||| | | || | | |||||||| | ||||||||||| | Sbjct 841 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTT 782 Query 211926 CCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTT 211985 ||| | ||||||||||||||||| |||||| |||||||| ||||| |||| ||| Sbjct 781 CCGCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 722 Query 211986 CGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGG 212045 ||||| ||| | | ||||| | ||||| || ||||| || |||||||||||||| Sbjct 721 TGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGG 662 Query 212046 TATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 ||||| || || |||||||||||| | |||||||| || ||||| |||||||||||||| Sbjct 661 AATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCA 602 Query 212106 CCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCA 212165 ||||| || ||| ||||| || ||| | ||||| || | ||||| ||||||||| Sbjct 601 TCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 542 Query 212166 CGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTA 212225 ||||| | || || ||| | ||| | |||||||||| || || || Sbjct 541 TGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGC 482 Query 212226 TGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTT 212285 ||||||| ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || Sbjct 481 GGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTT 422 Query 212286 CGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCT 212345 || || | |||||||| ||||| |||||||| | ||||| |||||| | Sbjct 421 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTT 362 Query 212346 CGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATT 212405 || | |||||||| | || | ||||| || || | ||||| | || ||||| || Sbjct 361 GGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTT 302 Query 212406 CAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCA-TCA-GGTAAGGTTGTT 212463 |||||||||||| ||||| ||||||||||| || ||||| || ||| ||| ||| | Sbjct 301 CAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA--CAGTCAGGGTCGTGTTATC 244 Query 212464 CCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGA 212523 ||||||| |||| | | || | || ||||||||||||||||| ||||| ||| | Sbjct 243 AACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 184 Query 212524 AATGCACACAACTTCCCACTTGACTTAGC 212552 ||||| ||||||||||| || ||| |||| Sbjct 183 AATGCTCACAACTTCCCTCTAGACCTAGC 155 >seq1 Length=68435666 Score = 111 bits (122), Expect = 3e-19 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 ||||| |||||| | || |||||||| | || | ||||| || || | |||| Sbjct 3686515 TTACATTTCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATT 3686574 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCA 212451 | || ||| | || |||||||||| ||||| ||||||||||| || ||||| | ||| Sbjct 3686575 AGTACTATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGAC-CGTCA 3686632 Query 212452 G-GTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 | || ||| | ||||||| |||| | | || | || || |||||||||||||| Sbjct 3686633 GAGTTGTGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGT 3686692 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||| ||| | ||||| ||||||||| | || ||| |||| Sbjct 3686693 AATGCATGAACGTAATGCTCACAACTTCTCTCTAGACCTAGC 3686734 Score = 91.5 bits (100), Expect = 2e-13 Identities = 221/331 (67%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 ||||||| ||| | |||| ||| || || |||| || || | ||| ||||| | || Sbjct 30150042 GGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTAGGTGCCCATGGTTTATTT 30150101 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTA-CACTTCTTCCT 212345 || ||| |||||| | ||||| |||||||| | ||| || || || | Sbjct 30150102 GGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 30150161 Query 212346 CGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATT 212405 || | |||| || || || | | |||| | || | ||||| | || ||| | || Sbjct 30150162 GGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGCTTTACGTATCAGTACTATGACTTT 30150221 Query 212406 CAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGG-TAAGGTTGTTC 212464 ||||||||||| ||||| | ||||||| | ||| || |||||| | | ||| || Sbjct 30150222 TAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA-ATCAGGGTTATGTTATTA 30150280 Query 212465 CTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAA 212524 | | | | |||| | | || | || ||| ||||||||| ||| | ||| | | Sbjct 30150281 CCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTA 30150340 Query 212525 ATGCACACAACTTCCCACTTGACTTAGCATC 212555 |||| ||||||||||| || ||| ||||||| Sbjct 30150341 ATGCTCACAACTTCCCTCTAGACATAGCATC 30150371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807150806639160