Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq40061 542 3e-149 seq1 125 8e-24 >seq40061 Length=156973 Score = 542 bits (600), Expect = 3e-149 Identities = 709/977 (73%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| |||||| || || | ||| |||| ||||| ||||| || |||||||| Sbjct 1128 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCC- 1070 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || |||||| | || ||||| |||||||||||||| || Sbjct 1069 TACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1010 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | ||||||||| | |||||| | | ||||| ||||| || ||||| Sbjct 1009 TATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 950 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 |||||| | |||| |||| || || || || || || ||||| || |||||||| Sbjct 949 TGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGC 890 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || |||||||| || || || || | ||||| Sbjct 889 GGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 830 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || ||||||||| | |||||||||| | | | || || || Sbjct 829 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTAT 770 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 769 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 710 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | || || | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 709 GATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 650 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||||||| | || ||||| || ||||||||||| || ||||| || || || || Sbjct 649 TTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACAT 590 Query 171214 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGT 171273 | |||||||| ||| | ||||| || || |||||||| ||||| ||||| | || Sbjct 589 GTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 530 Query 171274 GACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTT 171333 || ||| | | ||||| || || ||||| ||||| | || || || | || Sbjct 529 AACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATT 470 Query 171334 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 171393 ||| ||||| |||||||| ||||| || || ||||||||||| || || || |||| || Sbjct 469 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGAT 410 Query 171394 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 171453 |||||| ||||| |||||||| |||||||| ||||| |||||| | |||| | || Sbjct 409 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCC 350 Query 171454 TGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 171513 |||||| || | ||||| || || | ||||| |||| ||||| |||||||| || || Sbjct 349 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 290 Query 171514 ATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACA--TGGGGA 171571 ||||| ||||||||||| || || || || | | | || ||||| |||| Sbjct 289 TTTCAATTTCAACCAATCTGTAGTTGA--CAGTCAGGGTCGTGTTATCAACACTTGGGCT 232 Query 171572 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 171631 ||| | | || | || |||||||| |||||||| ||||||||| | ||||| |||||| Sbjct 231 GATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAAC 172 Query 171632 TTCCCACTAGACCTAGC 171648 ||||| ||||||||||| Sbjct 171 TTCCCTCTAGACCTAGC 155 Score = 358 bits (396), Expect = 8e-94 Identities = 702/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | |||||||||||| ||| || |||||||| || | || |||||||| Sbjct 33076 TTTGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGC 33135 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 33136 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTT 33195 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| || ||||| | || || ||| | || || || || || Sbjct 33196 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTG 33255 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| || | | | ||| | ||| | |||||||| Sbjct 33256 ACCGCTGCAGTTTCCACTCCTGCGAATAGTTTAGCACATTCCTTGTTGCTACTATGGGGC 33315 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 |||||||||||||| ||| || || |||| ||||||||| || || |||| ||||| Sbjct 33316 CCTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTT 33375 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 172154 || | ||||| || || ||||| |||||||| ||| | | || || || |||| || Sbjct 33376 GCTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTGCTCGA 33435 Query 172155 CTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACG 172214 ||| | || ||||| || ||| | |||||||| || ||||| || || Sbjct 33436 TCTGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTT 33495 Query 172215 AGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGT 172274 | || || || |||||| | ||||| | |||||||||| || || ||||| Sbjct 33496 TCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGC 33555 Query 172275 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 172334 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 33556 GTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAAC 33615 Query 172335 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 172394 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 33616 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCAT 33675 Query 172395 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 172454 ||||| || ||| | || || || | ||||| || | | | | Sbjct 33676 GGTGCTACCGTAGAAAATACTTTATTCGAAGA---------------TG--GTGACGGTG 33718 Query 172455 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 172514 ||| |||| ||| | || || | || || || | ||||| |||||| ||| | Sbjct 33719 CAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 33774 Query 172515 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 172574 ||||||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 33775 ACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 33834 Query 172575 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 172634 || ||| ||||| | || ||||| || | ||| | |||| || | || | || Sbjct 33835 CATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTC 33894 Query 172635 GGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 172694 || || || || |||||| | || || ||||| || || ||||| || | ||||| ||| Sbjct 33895 GGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGGAA 33954 Query 172695 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 172754 || || || ||||| || |||||||| || || || || | || |||||||| | || Sbjct 33955 GATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAGGTATTCGTGCT 34014 Query 172755 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 172814 |||||| | || ||||| || ||||| ||| || | ||||| || || || | || Sbjct 34015 TGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 34074 Query 172815 CGAGGCAACGCACTATAA 172832 || || ||||| || ||| Sbjct 34075 CGTGGAAACGCTCTTTAA 34092 >seq1 Length=68435666 Score = 125 bits (138), Expect = 8e-24 Identities = 192/268 (72%), Gaps = 13/268 (5%) Strand=Plus/Plus Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 |||| |||||| | ||| | |||||||| |||| || ||||| |||||| | |||| Sbjct 3686474 GATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTCTTCTTGGCTG 3686533 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | | |||||||| || | ||||| || || | |||| |||| ||| | || |||| Sbjct 3686534 TTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATGACTTTTAACC 3686593 Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGA-TTGT---ACCA 171562 | || | ||||| ||||||||||| ||||| || || | ||| |||| | || Sbjct 3686594 TAAATGATTTCAA-TTCAACCAATC---TGTAGTTG---ACCGTCAGAGTTGTGTTATCA 3686646 Query 171563 ACATGGGGA--GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 171620 | | ||| ||| | | || | || || ||||| |||||||| ||||||||| | | Sbjct 3686647 ATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAACGTA 3686706 Query 171621 ATGCACACAACTTCCCACTAGACCTAGC 171648 |||| ||||||||| | ||||||||||| Sbjct 3686707 ATGCTCACAACTTCTCTCTAGACCTAGC 3686734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569983230770040