Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq67 91.5 1e-13 seq389 87.8 2e-12 seq160 86.0 6e-12 seq12 86.0 6e-12 seq5 84.2 2e-11 seq71 82.4 7e-11 >seq67 Length=1088699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| || || || | || || ||||| || ||||| |||| || ||||| | Sbjct 291683 CTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATATCAACTC 291742 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| | ||||| ||||| || | | | ||| || | |||||| | ||| || Sbjct 291743 CATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCGCACCCCAACGCCCCCAAGAG 291802 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGC 119821 ||||| ||||| |||||||||||||||| ||| | | | |||||| |||| || || Sbjct 291803 CCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCACCAGCGC 291862 Query 119822 GACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 ||||| || |||| | | ||| ||| | || |||||||| || || Sbjct 291863 CACCGGCAACGCATCGCAGACGAACTCCCTCTCGATGTCGACAGCGTC 291910 >seq389 Length=334988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||||||| | |||| || || ||||| | ||| Sbjct 298380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 298439 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | | || || |||||||||||||| || || | |||||||| | Sbjct 298440 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 298499 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 || ||||| || |||| | ||||||| Sbjct 298500 AGGCTTAGGGGTGGAACA--ATGATTA 298524 >seq160 Length=614534 Score = 86.0 bits (94), Expect = 6e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||||||| | |||| | || || || | ||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| | | ||| || || |||||||||||||| || || | |||||||| | Sbjct 340195 GATGGTCGAACCCT-AGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTT 340253 Query 26981 GAGACTTAGAGGAGGAAAAAT 27001 || ||||| || |||| ||| Sbjct 340254 AAGGCTTAGGGGTGGAACAAT 340274 >seq12 Length=28800575 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 14079201 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 14079260 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||||| | || || || || || |||| | | | || ||||| ||| Sbjct 14079261 CAGAGGCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCCTCGCAGACTACAAC 14079320 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | ||||| |||||| | ||| | || || Sbjct 14079321 ATCCAGAAAGAATCCACTCTTCATCTTGTCCTGCGCCTTCGTGGTGG 14079367 >seq5 Length=51955539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || | || || || | |||||| |||| | || || Sbjct 10327810 CAAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTC 10327869 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | ||||| ||||| |||||||| || || || || || Sbjct 10327870 CTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCGGA 10327929 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || | ||||| | || ||| ||||| |||||||| | | | | || |||||| Sbjct 10327930 CCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCCTCGCCGACTA 10327989 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||| || || || || || ||||||| ||||| Sbjct 10327990 TAACATCCAGAAGGAGTCCACCCTCCATCTAGTCCT 10328025 >seq71 Length=983643 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || |||||||| || ||||| ||||| | |||| | || ||||| | ||| Sbjct 265160 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGTTGGAA 265219 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| | ||| | | ||| || || || ||||||||||| || ||| | || ||||| | Sbjct 265220 GATGGTCGAACCCT-AGCTGATTACAATATTCAAAAAGAGTCAACTCTTCACCTGGTTTT 265278 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| ||||| || |||| Sbjct 265279 GAGGCTTAGGGGTGGAA 265295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478422703819920