Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq389 86.0 5e-12 seq6 86.0 5e-12 seq2 84.2 2e-11 seq160 82.4 7e-11 >seq389 Length=334988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| || || ||||| || |||||||| ||| |||||| || || || || | ||| Sbjct 298380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 298439 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | | ||||| |||||||||||||| || ||| | ||| | || ||| Sbjct 298440 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 298499 Query 24204 AGATTGAGAGGAGGACTATAATGATT 24229 || | || || ||| | ||||||| Sbjct 298500 AGGCTTAGGGGTGGA--ACAATGATT 298523 >seq6 Length=44357769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || |||||| | Sbjct 21860977 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCG 21860918 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| || || ||||| || || || || || Sbjct 21860917 GACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCAG 21860858 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| |||||||| || || | | | | || |||||||||| Sbjct 21860857 CAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAAC 21860798 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||| ||||| ||||| | ||| Sbjct 21860797 ATCCAAAAAGAGTCTACTCTTCATCTGGTG 21860768 >seq2 Length=65558141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || || || | || || || | |||||| |||| || ||| | Sbjct 62822730 CAACATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATTACCCTCGAGGTAGAGTC 62822671 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| || ||||| || || || Sbjct 62822670 CTCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCAGA 62822611 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | || ||| ||||| ||||| || | | | | | || |||||| Sbjct 62822610 CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTA 62822551 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 62822550 CAACATCCAGAAGGAGTCCAC 62822530 >seq160 Length=614534 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/146 (74%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| || || ||||| || |||||||| ||| |||||| | || ||||| | ||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||| | | ||| ||||| |||||||||||||| || ||| | ||| | || || Sbjct 340195 GATGGTCGAACCCT-AGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTT 340253 Query 24203 AAGATTGAGAGGAGGACTATAATGAT 24228 ||| | || || ||| | |||||| Sbjct 340254 AAGGCTTAGGGGTGGA--ACAATGAT 340277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429726086569455