Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq14 96.9 3e-15 seq12 96.9 3e-15 seq10 96.9 3e-15 seq5 95.1 1e-14 seq6 93.3 3e-14 >seq1 Length=68435666 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | || |||| || || || |||||||| || || || |||||||| Sbjct 29766515 CCCTCCCCTAAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATATTATAGTCGGC 29766574 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| || |||| || | ||||| || || | || |||| ||| |||||| || Sbjct 29766575 GAGGGTCCTGCCGTCTTCAAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGG 29766634 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| ||||| || | | ||| || | | | | ||||| || ||| Sbjct 29766635 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCAATCGTGTCCGAGGACTCGAC 29766694 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||||||| ||||| || || ||||| || |||||||| Sbjct 29766695 CTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 29766742 >seq14 Length=24379743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || ||||||||||| | ||| | | ||||| | || Sbjct 6055547 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGC 6055488 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | ||||| ||||| || ||| || | |||||| ||||| || || Sbjct 6055487 TTTCCGGCGAAGATAAGGCGCTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGGATCTTG 6055428 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || ||| |||| ||||||||| || |||| Sbjct 6055427 GC--CTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCCGG 6055370 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || |||||||| |||||||| ||| Sbjct 6055369 TGAGGGTCTTGACAAAGATCTGCATCTTG 6055341 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || ||||||||||| | ||| | | ||||| | || Sbjct 6042248 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGC 6042189 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | ||||| ||||| || ||| || | |||||| ||||| || || Sbjct 6042188 TTGCCAGCGAAGATAAGGCGCTGCTGATCCGGTGGGATGCCCTCCTTGTCCTGGATCTTG 6042129 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || ||| || | ||||||||| || |||| Sbjct 6042128 GC--CTTGACGTTGTCGATTGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGG 6042071 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || ||||| |||||||| ||| Sbjct 6042070 TGAGGGTCTTAACAAAGATCTGCATCTTG 6042042 >seq12 Length=28800575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || |||||||||||||| ||||||||||| ||| Sbjct 14046830 CCCCCACGAAGGCGCAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCCGCC 14046771 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || ||| ||||||||| ||| || || || Sbjct 14046770 AGGGTACGCCCATCCTCAAGCTGCTTCCCGGCAAAAATAAGCCTCTGCTGATCAGGGGGG 14046711 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | ||||| | |||| Sbjct 14046710 ATCCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTATCAATGGTGTCCGAGCTCTCCA 14046653 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || ||||| || || |||||||||||||| Sbjct 14046652 CTTCCAGAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATCTGCAT 14046604 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || || |||||||| ||||||||||| || Sbjct 14035563 CCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGC 14035504 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | ||||||| ||||| || ||| | ||||||||||| || || || Sbjct 14035503 CAGCGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATAAGCCGCTGCTGATCTGGTGG 14035444 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | |||||| || || |||| ||| || | | | | ||||| | ||| Sbjct 14035443 GATGCCCTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTAC 14035384 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| || || || || ||||| |||||||| Sbjct 14035383 CTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 14035336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||| ||||| |||||||||||||||| || | | ||||||| |||| Sbjct 14045713 TGGAGTGTCGACTCTTTTTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCCAGTTGT 14045654 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | |||||| ||||| ||| | Sbjct 14045653 TTTCCAGCAAAGATGAGCCTCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTA 14045594 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||| | ||| ||||| |||||| || || || || Sbjct 14045593 GCCTTCACATTATCAATTGTGTCAGAGCTCTCAACTTCCAGGGTGATCGTCTTGCCAGTA 14045534 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| |||||||| Sbjct 14045533 AGGGTCTTCACAAAGATCTGCAT 14045511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || || |||||||| ||||||||||| || Sbjct 14046603 CCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGC 14046544 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | ||||||| ||||| || ||| | || || ||||| || || || Sbjct 14046543 CAGTGTGCGCCCATCCTCCAGCTGTTTACCAGCAAAGATGAGACGCTGCTGATCTGGTGG 14046484 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | | |||||| | ||| Sbjct 14046483 GATGCCCTCCTTATCCTGGATCTTAGC--CTTTACATTGTCAATGGTGTCGGAGCTCTCT 14046426 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| |||||||| || || || ||||| |||||||| Sbjct 14046425 ACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCAT 14046376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || || |||||||| ||||||||||| || Sbjct 14079140 CCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGC 14079081 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||||||| ||||| || ||| | || || ||||| || ||| || Sbjct 14079080 CAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGG 14079021 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | | ||||| | ||| Sbjct 14079020 GATGCCCTCCTTATCCTGGATCTTAGC--CTTTACATTGTCAATGGTGTCAGAGCTCTCT 14078963 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| || || || || ||||| |||||||| Sbjct 14078962 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 14078913 >seq10 Length=31890735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||| || || |||| ||| | | ||| Sbjct 15231377 AGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCC 15231436 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| || || ||| | || | ||||| |||||| ||| | ||| || ||||| Sbjct 15231437 TCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 15231496 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGG 16901 ||||| |||||| | | | | |||| ||| |||| || || | ||||||| Sbjct 15231497 TGAATTTTAGCCTTCACGTTGTCAATCGTGT--CCGAGCTCTCGACCTCAAGAGTGATGG 15231554 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| |||||||| Sbjct 15231555 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 15231588 >seq5 Length=51955539 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||| |||||||| | ||| | |||| Sbjct 10328025 AGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCT 10327966 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | |||||||||||| Sbjct 10327965 TCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCC 10327906 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| || ||| || | |||||||| Sbjct 10327905 TGGATCTTGGC--CTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGG 10327848 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || || || |||||||| ||| Sbjct 10327847 TCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTTG 10327810 >seq6 Length=44357769 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || |||||||||||||| ||||| || ||||| Sbjct 21860979 CCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGCG 21861038 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||| || | || || ||||| |||||| || Sbjct 21861039 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 21861098 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||| || || || || ||| || | | | | ||||| | ||| Sbjct 21861099 ATGCCCTCTTTATCCTGGATCTTGGC--CTTGACGTTGTCGATCGTGTCCGACGACTCGA 21861156 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||| || || ||||| || |||||||| Sbjct 21861157 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21861205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404890218442390