Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq875 131 1e-25 seq2879 122 6e-23 seq4453 118 7e-22 seq2260 113 3e-20 seq2908 109 4e-19 seq1607 109 4e-19 seq25041 96.9 2e-15 seq18893 96.9 2e-15 seq13536 96.9 2e-15 seq4607 96.9 2e-15 seq10791 89.7 3e-13 seq15831 82.4 5e-11 seq12 82.4 5e-11 >seq875 Length=163878 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 141761 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTTGATAGTAGATAGGGATAGTGGGAATCTCGT 141702 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 141701 TAATCCATTCATGCGCATCACTAATTAGATGACGA 141667 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 156533 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 156474 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 156473 TAATCCATTCATGCGCATCACTAATTAGATGACGA 156439 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||| ||||||||||||||| | Sbjct 106012 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTATTCGCTATCGGTCTCTC 105953 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 105952 GCCAATATTTAGCCTT 105937 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| | Sbjct 160481 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTCTC 160422 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 160421 GCCGGTATTTAGCCTT 160406 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||||| | Sbjct 139477 CTCTCTTTTCAAAGTCCTTTTCATCTTTTACTCGCGGTACTTGTTCGCTATCGGTCTCTC 139418 Query 20007 GGTAATATTTAGCCTT 20022 | |||| |||||| Sbjct 139417 GTCGGTATTCAGCCTT 139402 >seq2879 Length=54927 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||||||||| || |||||||| Sbjct 25690 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 25749 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||| |||| |||||||||||||||||| Sbjct 25750 TAATCCATTCAAGCGCATCACTAATTAGATGACGA 25784 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 27699 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 27758 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||||| Sbjct 27759 ATCGGTATTTAGCCTT 27774 >seq4453 Length=34979 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||||||||||||| ||||||| | |||| || |||||||| Sbjct 33479 AAGGCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTACACAGGGACAGTGGGAATCTCGT 33538 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 33539 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 33573 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||| ||||||||| ||||| | Sbjct 29543 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTATTCGCTATCAGTCTCTC 29602 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 29603 GCCGGTATTTAGCCTT 29618 >seq2260 Length=73924 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| | || | |||||| | Sbjct 1664 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAAGGACAGTGAGAATCTCAT 1723 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| |||||||||||||||||| Sbjct 1724 TAATCCATTCATGCGCATCACTAATTAGATGACGA 1758 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||| ||||| ||| ||| ||||||||| |||| || |||||| | Sbjct 17262 AAGCCTGTTCCCTTGACTGTGTTTTTGCTGGATAGTAGACAGGGATAGTGGGAATCTCAT 17321 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| | |||||||||||||||||| Sbjct 17322 TAATCCATTCATGCACATCACTAATTAGATGACGA 17356 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | Sbjct 3879 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGATACTTGTTCGCTATCGGTCTCTC 3938 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||||| Sbjct 3939 ACCGGTATTTAGCCTT 3954 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 62889 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 62948 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 62949 GCCGGTATTTAGCCTT 62964 >seq2908 Length=48135 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || |||||||| ||||||| || ||||||||| ||| || |||||||| Sbjct 30017 AAGCCCATTTCCTTGGCTATGGTTTCACTGGATAGTAGACAGGAACAGTGGGAATCTCGT 29958 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 29957 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 29923 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| |||||||||||||| ||||||||| |||| || ||| | || Sbjct 2765 AAGCCCGTTCCCTTAGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATTTAGT 2706 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||| ||| ||||||||||||||||| || Sbjct 2705 TAATCCATTCTTGCACGTCACTAATTAGATGATGA 2671 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/78 (85%), Gaps = 5/78 (6%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT--C 20004 |||||| |||||||| ||||||| ||||||||| || |||||||||||||||||||| Sbjct 18648 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGATACTTGTTCGCTATCGGTCTTCA 18589 Query 20005 GCGGTAATATTTAGCCTT 20022 ||| ||||||||||| Sbjct 18588 TCGG---TATTTAGCCTT 18574 >seq1607 Length=110441 Score = 109 bits (120), Expect = 4e-19 Identities = 83/97 (86%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTA--GATAGGG-----GGTAATCTC 25954 |||||||||||||||| |||||||||||| ||||||| ||||||| || |||||| Sbjct 108736 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTGGATAGTATAGATAGGGATAGTGGGAATCTC 108677 Query 25955 GTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||| || ||| |||||||||||||||||||| Sbjct 108676 GTTAATCCATTTGTGCACGTCACTAATTAGATGACGA 108640 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || |||||||| ||||||| || ||||||||| ||| || |||||||| Sbjct 58865 AAGCCCATTTCCTTGGCTATGGTTTCACTGGATAGTAGACAGGAACAGTGGGAATCTCGT 58806 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| |||||||||||||||||| || Sbjct 58805 TAATCCATTCATGTGCGTCACTAATTAGATGATGA 58771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 78/93 (84%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG-TA--GATAGGGGGTAATCTCGTTA 25958 |||||||||||||| |||||||||||||| ||||| || || || ||| ||| | |||| Sbjct 13314 AAGCCCGTTCCCTTAGCTGTGGTTTCGCTGGATAGATAGGGACAGTGGG-AATTTAGTTA 13256 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||| || || ||||||||||||||| || Sbjct 13255 ATCCATTCTTGTGCATCACTAATTAGATGATGA 13223 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||| ||| |||||||| ||||||||||||||| | Sbjct 106723 CTCTCTTTTCAAAGTTCTTTTCATCTTTTTCTCGCGGTACTTATTCGCTATCGGTCTCTC 106664 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 106663 GCCGGTATTTAGCCTT 106648 >seq25041 Length=5667 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 3297 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 3356 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||||| Sbjct 3357 ACCGGTATTTAGCCTT 3372 >seq18893 Length=5333 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 3700 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3759 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3760 GTCGGTATTTAGCCTT 3775 >seq13536 Length=5117 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4293 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4352 Query 20007 GGTAATATTTAGCCTT 20022 ||||||||||| Sbjct 4353 ACCGGTATTTAGCCTT 4368 >seq4607 Length=37173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 1257 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 1198 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 1197 GCCGGTATTTAGCCTT 1182 >seq10791 Length=8372 Score = 89.7 bits (98), Expect = 3e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 || |||||||| ||||||| ||||||||| |||||||||||||||||||||||| || Sbjct 2235 CTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCG 2294 Query 20011 ATATTTAGCCTT 20022 ||||||||||| Sbjct 2295 GTATTTAGCCTT 2306 >seq15831 Length=3119 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/78 (85%), Gaps = 5/78 (6%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT--C 20004 |||||| |||||||| ||||||| ||||||||| || |||||||||||||||||||| Sbjct 2185 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGATACTTGTTCGCTATCGGTCTTCA 2244 Query 20005 GCGGTAATATTTAGCCTT 20022 ||| ||||||||||| Sbjct 2245 TCGG---TATTTAGCCTT 2259 >seq12 Length=28800575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||||| ||||| || | ||| || | || || Sbjct 14079121 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCC 14079062 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || ||||| || ||||| || || || || ||||| | |||| ||| || || ||| Sbjct 14079061 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 14079002 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| ||||| | | || || || || || || | || || || || Sbjct 14079001 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 14078942 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | ||| ||||| || ||||||||| Sbjct 14078941 CCAGTGAGGGTCTTCACAAAGATCTGCATG 14078912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334783664227691