Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq12 122 8e-23 seq1 98.7 9e-16 seq71 87.8 2e-12 seq160 84.2 2e-11 >seq12 Length=28800575 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || ||||||| | ||||| || ||| Sbjct 14032696 ATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACTCTTGAAGTTGAAAGCTCT 14032755 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| || || || || || |||||| Sbjct 14032756 GATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAA 14032815 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || ||||||| ||||||||||| | || |||| |||||| ||| || ||||| Sbjct 14032816 CAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 14032875 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || ||| | || || Sbjct 14032876 ATTCAGAAAGAGTCGACACTCCATCTTGTTCT 14032907 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || ||||||| |||| || ||| ||| Sbjct 14035336 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTAGAGAGCTCT 14035395 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| || || || || || ||||| || | Sbjct 14035396 GACACCATTGA--CAATGTAAAGGCTAAAATCCAGGATAAGGAGGGCATCCCACCAGATC 14035453 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | |||||| |||| ||||| || ||||| | || |||| ||||| ||| || |||| Sbjct 14035454 AGCAGCGGCTTATCTTTGCTGGTAAACAGCTGGAGGATGGGCGCACGCTGGCAGACTACA 14035513 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| ||||| || || ||||| || || Sbjct 14035514 ACATTCAAAAGGAATCTACTCTTCATTTGGTCCT 14035547 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | ||||||||| || Sbjct 14046604 ATGCAGATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTCTGGAAGTGGAGAGCTCG 14046663 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| |||||||| || ||||| || Sbjct 14046664 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 14046723 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || ||||||||||||| || || | || |||| || || ||| || ||||| Sbjct 14046724 CAGAGGCTTATTTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCCTGGCGGACTACAAC 14046783 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || ||| | || || Sbjct 14046784 ATCCAAAAGGAGTCCACTCTTCATCTTGTCCT 14046815 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||||||| || Sbjct 14079141 ATGCAGATTTTTGTGAAGACCCTCACTGGGAAGACCATCACTTTGGAAGTGGAGAGCTCG 14079200 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| |||||||| || |||||||| Sbjct 14079201 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 14079260 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | || |||| || || | | || ||||| Sbjct 14079261 CAGAGGCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGACGTACCCTCGCAGACTACAAC 14079320 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 14079321 ATCCAGAAAGAATCCACTCTTCATCTTGTCCT 14079352 >seq1 Length=68435666 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | || ||||| | ||||| |||| |||||| || Sbjct 29766514 ATGCAAATCTTCGTGAAGACTCTCACGGGTAAGACGATCACCCTCGAGGTGGAGAGCTCG 29766455 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || ||| || || || |||||||| || ||||| Sbjct 29766454 GACACTATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGGATTCCGCCGGACCAG 29766395 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| || ||| | || || | | ||| | | ||||||||| Sbjct 29766394 CAGAGGCTGATCTTCGCCGGGAAGCAACTGGAGGACGGGAGGACTCTCGCGGATTACAAT 29766335 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || || | ||||| Sbjct 29766334 ATCCAAAAGGAGTCTACCCTCCACCTGGTGCT 29766303 >seq71 Length=983643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || ||||| || || || || || || | |||||||| || ||||| || ||| Sbjct 265160 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGTTGGAA 265219 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||||||||||||||| || || || || | || | Sbjct 265220 GATGGTCGAACCCTAGCTGATTACAATATTCAAAAAGAGTCAACTCTTCACCTGGTTTTG 265279 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 265280 AGGCTTAGGGGTGGAA 265295 >seq160 Length=614534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || || || || || ||||| | | |||||||| || || || || ||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||| ||||||||||| || || || ||| | || || Sbjct 340195 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 340254 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 340255 AGGCTTAGGGGTGGAA 340270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433116430447715