Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 2e-13 seq6717 89.7 6e-13 seq10 87.8 2e-12 seq5 87.8 2e-12 seq2 87.8 2e-12 seq1 87.8 2e-12 seq15 86.0 7e-12 seq105 84.2 2e-11 seq6 84.2 2e-11 seq3 84.2 2e-11 seq4 82.4 8e-11 >seq12 Length=28800575 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/97 (81%), Gaps = 6/97 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 24951222 ACCGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGA 24951279 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 |||||||||| || ||||| |||||||| | ||| Sbjct 24951280 GGGCGTGGGTTCAAATCCCACTTCTGACAAAATTTTA 24951316 >seq6717 Length=6242 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--GCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || | || ||| Sbjct 5673 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTGAGAGGGCG 5732 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 5733 TGGGTTCAAATCCCACTTCTGACAAA 5758 >seq10 Length=31890735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 27838805 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 27838862 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||| || ||||| |||||||| Sbjct 27838863 CGTGGGTTCAAATCCCACTTCTGACAAA 27838890 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | Sbjct 15003152 ACTGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATAGAGG 15003093 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 15003092 GCGTGGGTTCAAATCCCACTTCTGACA 15003066 >seq5 Length=51955539 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320 |||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 41908833 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAG 41908776 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 41908775 GGCGTGGGTTCAAATCCCACTTCTGACA 41908748 >seq2 Length=65558141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 22512799 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGT 22512742 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| |||| | |||| || || || Sbjct 22512741 GGGTTCAAATCCCACAGCTGTCAAAAAAATATTTGACTTGTT 22512700 >seq1 Length=68435666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 66426210 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 66426267 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| || ||||| ||||||| Sbjct 66426268 GCGTGGGTTCAAATCCCACTTCTGACAA 66426295 >seq15 Length=24314465 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 22677352 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 22677409 Query 126325 GGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||| || |||||| ||| |||| ||| Sbjct 22677410 GGGTTCAAATCCCACAGCTGTCAAAATAT 22677438 >seq105 Length=980286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 761621 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGTGGG 761678 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| | ||| || Sbjct 761679 TTCAAATCCCACAGCTGTCAATTAATTCTT 761708 >seq6 Length=44357769 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 30792832 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGTGGG 30792889 Query 126328 TTCGAACCCCACACCTGAC-AAATTATTAT 126356 ||| || |||||| ||| | ||||| |||| Sbjct 30792890 TTCAAATCCCACAGCTGTCAAAATTTTTAT 30792919 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 30812392 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCGTGGG 30812449 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 30812450 TTCAAATCCCACAGCTGTCAATTT 30812473 >seq3 Length=60060032 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 55891734 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 55891677 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 55891676 CGTGGGTTCAAATCCCACTTCTGACA 55891651 >seq4 Length=57251647 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || | | | ||| Sbjct 31896389 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATAGAGGGCG 31896330 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 31896329 TGGGTTCAAATCCCACTTCTGACA 31896306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556581944993640