Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 seq67 116 8e-21 seq4 95.1 2e-14 seq9 93.3 9e-14 seq5 93.3 9e-14 seq7 91.5 3e-13 seq6 91.5 3e-13 seq13 89.7 1e-12 seq15 86.0 1e-11 seq2 86.0 1e-11 seq11 84.2 4e-11 >seq3 Length=60060032 Score = 125 bits (138), Expect = 1e-23 Identities = 547/853 (64%), Gaps = 22/853 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||||| ||| || | || || || |||||||| ||||||| || || | Sbjct 42479521 TCGAAGAAATTAGTCTTCCCTTGAAGTGATATCAGCTCCATCCAGTCGAATGGATTCGCC 42479580 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||| ||| | || | || | |||| || || ||||| ||||| | Sbjct 42479581 ACCCCGTACAACTTTCCACATCCCAAAGCCAACAAGAGCCGATCCGCCACGAACTCAATG 42479640 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAA-GGAATTGCCTCACAGAT 251741 ||||| | ||||| || |||||| || | || || || || | || || || | Sbjct 42479641 TACTGGCTCATCAAATCCCCGTTCATCCCCACCAG-CGCCACCGGCAGCGCGTCGCAAAC 42479699 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||| | || || | || || || | | || | ||| | | || || || Sbjct 42479700 GAACTCCCTCTCAATGTCCACAGCGTCGGCGATGATCGACTTGATGCGGTCCTCCGAGAG 42479759 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCG 251861 |||| | || ||||| ||||| | | || | ||| || ||||||||||| Sbjct 42479760 CTTGCGGTTGAGGAGGGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCG 42479819 Query 251862 ACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAA 251921 | ||||| ||||||||| | || || ||||| | ||||| ||| |||||||||| Sbjct 42479820 AGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGAGCCAGAA 42479879 Query 251922 GATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCG 251981 ||| | ||| ||||| |||||||| | | ||||| || | ||||||| ||||| Sbjct 42479880 GATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAATGCAACGAGGCG 42479939 Query 251982 CTCAGCAAACGACTTGTCCTGCGACAAGA---ACTTCTGTGCCCATGCTGCCTTCTTTCC 252038 ||| || || ||| || ||| || || | |||||| ||||||||| Sbjct 42479940 CTCGGCGAAAGAC---TCGGAGGACTCGATCCACCGGAGGGCCCATTGGGCCTTCTTTGT 42479996 Query 252039 AACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTC-CGCTCGGCATCGTCCTCGA 252097 ||||| |||| || |||| || ||| || | | || ||| | |||| || Sbjct 42479997 CACCGCCGGGACGGTCTCGACGGCGCGAAAAAG-GCGATCTTTTTCGTCCGGATCCTTGA 42480055 Query 252098 TGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGT 252157 || | || || ||||| ||||||||||| || || ||| ||| || || ||| Sbjct 42480056 TGTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGAATGTTCTCGATGGCGATTTGGA 42480115 Query 252158 AAGCATAGAATAGACGCG-----CGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 | | |||| || |||| ||| || || | ||| || | ||| | || Sbjct 42480116 AGCCGTAGA--AGGCGCGAGCCTCGG--GGATCTG-GACGTCGGACATGAAGCGGACGGC 42480170 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || ||||| ||| | | || |||||| | || ||| |||||| Sbjct 42480171 GAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATGAA 42480230 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTC-CTGATTCAGAGGAA 252331 ||| ||||| ||| | |||| ||| |||||| || | || ||| ||| | Sbjct 42480231 GTGGCGCTCGTCGGTGGTGAGGGTGTGGAGCCAGTGGGGGAGATCGCTG-GAGAGATCGA 42480289 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGT 252391 | || || | |||||||| | || || |||||||||||||| | |||| ||||| Sbjct 42480290 CCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACATCTCCCACACCGGAGGGT 42480349 Query 252392 ACTTGATTGGGAA 252404 | ||| ||||| Sbjct 42480350 AGCGGATGGGGAA 42480362 >seq67 Length=1088699 Score = 116 bits (128), Expect = 8e-21 Identities = 373/570 (65%), Gaps = 18/570 (3%) Strand=Plus/Plus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| || ||||||||||| ||||| ||||||||| | ||| || ||||| | || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACA-C 251962 || ||| ||||||||||||| | || ||||| || ||||| | | ||||| ||| | Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGAC---AAGAACTTCTGTG 252019 | | | || || |||||||| || || || |||| ||| | ||| | | Sbjct 292106 AGA-GAAGGCCACGAGGCGCTCCGCGAAGGA---GTCCGAGGACTCAATCCACTGGAGCG 292161 Query 252020 CCCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC 252079 |||| |||||||| | ||||| |||| || |||| ||| ||| || || Sbjct 292162 CCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAAAGGCGGTCTT 292221 Query 252080 GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGG 252139 ||| || ||| | |||| | || |||| ||||| |||||||| || |||||| Sbjct 292222 TTTCGTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACATCTCGGAGTGGATGT 292281 Query 252140 ATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGG---TCGGTGACTTCCG 252196 |||| || |||||| | | |||| || |||| | || || | ||| || | Sbjct 292282 TTTCGATGGCTATCTGGAAGCCGTAGA--AGGCGCGAGCCTCGGCAATCTG-GACGTCGG 292338 Query 252197 TGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAA 252256 ||| | || | |||||| | || ||||| ||| | | || ||||| ||| Sbjct 292339 ACATGAAGCGGGCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAAGCAA 292398 Query 252257 GAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGT 252316 | | | ||||||||| ||||| ||| | |||| ||| |||||| || | || Sbjct 292399 GGACGTGGGAGATGAAGTGGCGCTCGTCGGGGGTGAGGGTGTGGAGCCAGTGGGGGAGGT 292458 Query 252317 CCTGATTCAGAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | ||||| || || || | |||||||| | || || |||||||||||||| Sbjct 292459 C--GGCGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACAT 292516 Query 252375 TGCGAACACATCAGGGTACTTGATTGGGAA 252404 | |||| | |||||| ||| ||||| Sbjct 292517 CTCCCACACCTGGGGGTACCGGATGGGGAA 292546 >seq4 Length=57251647 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| ||||| ||| |||| ||||| || ||| ||| | ||||||||| |||||||||| Sbjct 50599542 AGGTTGCTCAATTTGCTGGCTATGTTTCGGAACATTCAGCCTACCATCATGGTGAGCAGA 50599483 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 |||| | ||||| | || ||||| || || | ||| || || |||||||| ||| Sbjct 50599482 GTCTTGCTAGCACCATTATTGGAATGGCTCAAGATTTTGTTGGTAGCAACAACATAAACC 50599423 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||| || || || || ||||| Sbjct 50599422 TTCTGCAACCTAATGGACAATTTGG 50599398 >seq9 Length=38056896 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 22672288 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 22672347 Query 142563 CCCCAC 142568 |||||| Sbjct 22672348 CCCCAC 22672353 >seq5 Length=51955539 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 48503405 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 48503464 Query 142563 CCCCAC 142568 |||||| Sbjct 48503465 CCCCAC 48503470 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 5459842 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5459901 Query 142564 CCCAC 142568 ||||| Sbjct 5459902 CCCAC 5459906 >seq7 Length=43454766 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 18185482 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18185423 Query 142564 CCCAC 142568 ||||| Sbjct 18185422 CCCAC 18185418 >seq6 Length=44357769 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 42324951 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42324892 Query 142564 CCCAC 142568 ||||| Sbjct 42324891 CCCAC 42324887 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| |||||||| ||||||||||| || ||||||| || |||||||||||||| Sbjct 37865317 GAGAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 37865258 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 37865257 GAGCCCCAC 37865249 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5238498 AGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5238557 Query 142563 CCCCAC 142568 |||||| Sbjct 5238558 CCCCAC 5238563 >seq13 Length=27817470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||| Sbjct 22004977 TAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 22005036 Query 142562 GCCCCAC 142568 ||||||| Sbjct 22005037 GCCCCAC 22005043 >seq15 Length=24314465 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 15621193 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15621134 Query 142564 CCCAC 142568 ||||| Sbjct 15621133 CCCAC 15621129 >seq2 Length=65558141 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 30685400 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 30685341 Query 142564 CCCAC 142568 ||||| Sbjct 30685340 CCCAC 30685336 >seq11 Length=30068910 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||| |||||||| || ||||||| || |||| |||||||||||| Sbjct 11908152 AGCCCGTCTAGCTCAGTCGATAGAGCGCAAGGCTCTTAACCTTGTGGGCGTGGGTTCGAG 11908093 Query 142563 CCCCAC 142568 |||||| Sbjct 11908092 CCCCAC 11908087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027309230321301