Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 306 7e-78 seq67 271 1e-67 >seq3 Length=60060032 Score = 306 bits (338), Expect = 7e-78 Identities = 442/617 (72%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || ||||||||||||||||| |||||||| ||| |||||||| ||| | | | Sbjct 42480220 ACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCT 42480161 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 ||||| || || ||| | ||||| ||| ||||||||||||||| || ||||| | Sbjct 42480160 TCATGTCCGACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCG 42480101 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 ||||| | ||||| ||| ||||| || || ||| | | |||||| |||||| | || Sbjct 42480100 AGAACATTCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACG 42480041 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGAC 42656 | | | || || ||| | ||||| | ||| || | | |||||||| | Sbjct 42480040 AAAAAGATCGCCTTTTTCGCGCCGTCGAGACCGT-CCCGGCGGTGACAAAGAAGGCCCAA 42479982 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| ||| ||||||||| |||| | |||| |||| | || || || ||| Sbjct 42479981 TGGGCCCTCCGGTGGATCGAGTCCTCCGAGTCT---TTCGCCGAGCGCCTCGTTGCATTT 42479925 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||| ||||| ||||||||||| ||| ||||| ||||||||||||||||||| || Sbjct 42479924 GCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAG 42479865 Query 42777 AA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || ||||| || ||||||||||| ||||| |||||| | |||||||| || Sbjct 42479864 CGTGGTCTC-ATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCT 42479806 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 || | ||||| ||||||||||| | ||| || ||||| | ||||| |||| |||| Sbjct 42479805 CCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGCTCTCGGAGGA 42479749 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 || || | | |||||| | || || ||||| || |||| ||||||| | | | Sbjct 42479748 CCGCATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTTCGTTTGCGACGC 42479689 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 |||||| ||| | ||||| || |||||| || | ||| || ||||||| ||| ||| Sbjct 42479688 GCTGCCGGTGGCGCTGGTGGGGATGAACGGGGATTTGATGAGCCAGTACATTGAGTTCGT 42479629 Query 43016 CGCCGACCATCTCCTGT 43032 || || | ||| ||| Sbjct 42479628 GGCGGATCGGCTCTTGT 42479612 >seq67 Length=1088699 Score = 271 bits (300), Expect = 1e-67 Identities = 499/725 (69%), Gaps = 10/725 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || || |||||||||||||| |||||||| ||| |||||||| ||| || | |||||| Sbjct 292399 CTTGCTTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCGCTTCATG 292340 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| ||||| ||| |||||||||||||||||||||||| || ||| Sbjct 292339 TCCGACGTCCAGATTGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGAAAAC 292280 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| |||| | |||| | | |||||| || || | ||| Sbjct 292279 ATCCACTCCGAGATGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAA 292220 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTGGGC 42661 || | || || || | |||||| | ||| || | ||||||||| | ||||| Sbjct 292219 GACCGCCTTTTTCGTGCTGTCGAGACGGT-CCCGGCGGTGGCGAAGAAGGCCCAGTGGGC 292161 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 |||| | ||||| ||| | ||| | |||| ||| | || || ||||| | || Sbjct 292160 GCTCCAGTGGATTGAGTCCTCGGACTCC---TTCGCGGAGCGCCTCGTGGCCTTCTCTGC 292104 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GG 42780 || ||||| ||||||||||| ||| ||||| |||||||||||||||||| || || Sbjct 292103 TGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGG 292044 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || || |||||||| ||||| |||||| | | |||||||| || || Sbjct 292043 CCTC-ATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACT 291985 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | ||||| ||||||||||| | ||| || ||||| ||||||| | | |||| || Sbjct 291984 GCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCACAAGCTCCCTGAGGATCGCA 291928 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 || | | |||||| | || || || || ||||||| ||||||| || | || ||| Sbjct 291927 TCAAGTCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCGATGCGTTGC 291868 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 | ||| | ||||| || ||||| || | ||| || | |||||| ||| ||| || | Sbjct 291867 CGGTGGCGCTGGTGGGGATGAATGGGGATTTGATGAGCGAATACATCGAGTTCGTGGCGG 291808 Query 43021 ACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 | | ||| || | | |||| | | | ||| | | || ||||| | Sbjct 291807 ATCGGCTCTTGGGGGCGTTGGGGTGCGGGAAGTTGTACGGGGCAGCCAATCCGTTCGATT 291748 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| || ||| | |||| ||||| ||||||||||||||| | |||| |||| Sbjct 291747 GGATGGAGTTGATATCGCTCCAGGGGAAGACGAACTTTTTCGAGAAGAGGGTCGGGGACT 291688 Query 43141 ACCAG 43145 ||||| Sbjct 291687 ACCAG 291683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943866310341360