Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq67 149 7e-31 seq3 120 4e-22 seq4 89.7 6e-13 >seq67 Length=1088699 Score = 149 bits (164), Expect = 7e-31 Identities = 190/261 (73%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | ||| || || || ||||||||||| ||||| ||| Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 | ||| || | ||| ||||| || |||||| ||| | |||| ||||| | ||| Sbjct 292106 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGA---GGACTCAATCCACTGGAGCGC 292162 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||||| ||||| ||| | | |||||| |||| || || ||| || | || Sbjct 292163 CCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAAAGGCGGTCTTT 292222 Query 126298 TTCTGATGGATCTTTGATGTA 126318 ||| || ||||||||||| Sbjct 292223 TTCGTCAGGGTCTTTGATGTA 292243 >seq3 Length=60060032 Score = 120 bits (132), Expect = 4e-22 Identities = 310/458 (68%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCC 125815 |||||| || |||| |||||||||||| || |||||||| | ||| |||||| |||| Sbjct 42479502 GTAGTCTCCGACCCTCTTCTCGAAGAAATTAGTCTTCCCTTG-AAG-TGATATCAGCTCC 42479559 Query 125816 ATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 125873 || | || ||||| ||| | ||| || | || ||||| || | Sbjct 42479560 ATCCAGTCGAATGGATTCGCCACCCCGTACAACTT-TCCACATCCCAAAGCCAACAAG-A 42479617 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-G 125932 | ||||||| ||| |||||||||||| |||| || |||||| || | || | Sbjct 42479618 GCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCCCACCAGCG 42479677 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 || || |||||||| | | |||| || ||||||| ||||| || || | ||| Sbjct 42479678 CCACC-GGCAGCGCGTCGCAAACGAACTCCCTCTCAATGTCCACAGCGTCGGCGATGATC 42479736 Query 125993 GCGTGAATGGTGTCCACCCC-AGGT--CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | | ||| |||| || || | | ||| | | | | || ||| || ||| Sbjct 42479737 GACTTGATGCGGTCCTCCGAGAGCTTGCGGTTGAGGAGGGAGTAGAGGAGG--CA-GGCG 42479793 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || |||||| |||||||| || |||||||| || || |||||| || || ||| Sbjct 42479794 AAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGC 42479853 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || || || || ||||||||||| ||| Sbjct 42479854 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCC 42479913 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || || || |||| ||| ||||| || || || Sbjct 42479914 TCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAAAGA 42479951 >seq4 Length=57251647 Score = 89.7 bits (98), Expect = 6e-13 Identities = 226/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 || |||||||| || || || || || || |||| || || || | ||||| Sbjct 44157248 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 44157189 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 ||||||||||||||||| || ||||| | |||||||| | ||||||||| | | | Sbjct 44157188 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--ACCTC 44157131 Query 10940 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACG 10997 | | || | | | |||| | || || || ||||| ||||| | |||| ||| || | Sbjct 44157130 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGCAAG 44157071 Query 10998 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 | ||| || ||| |||| ||| | ||| ||||||| ||||| ||||| || Sbjct 44157070 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 44157013 Query 11056 AAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 11114 |||||| || ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 44157012 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 44156954 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || || ||| || | || ||||| || || || Sbjct 44156953 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 44156917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597054467717880