Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq67 118 1e-21 seq14 104 2e-17 seq12 104 2e-17 seq17 95.1 1e-14 seq10 87.8 2e-12 >seq67 Length=1088699 Score = 118 bits (130), Expect = 1e-21 Identities = 325/497 (65%), Gaps = 6/497 (1%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 || ||||| |||||||| | ||||||| ||| | | | | | | || |||||| Sbjct 292177 AAGAAGGCCCAGTGGGCGCTCCAGTGGATTGAGTCCT---CGGACTCCTTCGCGGAGCGC 292121 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | ||||||||| | || ||||| | || || |||||| ||| ||||||| Sbjct 292120 CTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTC 292061 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | ||||| || ||||| ||| ||||||| | || || ||| Sbjct 292060 TGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGC 292001 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAA 52580 ||||| || || ||| ||||| || |||||| |||| | | | | | | | || Sbjct 292000 GACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACT---CCCTCCTCAACCACAAG 291944 Query 52581 TTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTT 52640 | | ||| ||| | || || || || || | ||||| | |||||| Sbjct 291943 CTCCCTGAGGATCGCATCAAGTCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTC 291884 Query 52641 TTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTAC 52700 | | ||| ||||||| | |||| |||| ||||| | | | | ||| |||| ||| Sbjct 291883 GTCTGCGATGCGTTGCCGGTGGCGCTGGTGGGGATGAATGGGGATTTGATGAGCGAATAC 291824 Query 52701 ATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCT 52760 |||||||| ||||||||||| || |||| | | | ||| |||| | | || Sbjct 291823 ATCGAGTTCGTGGCGGATCGGCTCTTGGGGGCGTTGGGGTGCGGGAAGTTGTACGGGGCA 291764 Query 52761 CGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAG 52820 ||||||||| || | ||| | || ||||| |||| ||||| |||||||||||| Sbjct 291763 GCCAATCCGTTCGATTGGATGGAGTTGATATCGCTCCAGGGGAAGACGAACTTTTTCGAG 291704 Query 52821 AAGCGAGTCGGCGAGTA 52837 ||| | ||||| || || Sbjct 291703 AAGAGGGTCGGGGACTA 291687 >seq14 Length=24379743 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || || || | | | || ||||| ||||||||||| || || || || Sbjct 11039430 CGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 11039371 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| ||||| || || | | |||| |||||||| ||||| ||||| || ||||| ||| Sbjct 11039370 TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 11039311 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | |||| || | | || | |||||| | ||||||||| | || | Sbjct 11039310 TC-CTGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAAGTGAT 11039252 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || |||||||| || ||||| |||||||| Sbjct 11039251 CGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || |||||||||||||| | ||| || ||||| || || || |||| Sbjct 11039639 TTGATTCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGG 11039580 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | |||| || ||||| || || || ||||| || || ||||| ||| | ||||| || Sbjct 11039579 CAAAGATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTC-CTGAATCTTTGTCTTC 11039521 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | ||||||||| | || | || || || || | ||| Sbjct 11039520 ACATTATCAATGGTGTCAGAACTCTCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTC 11039461 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 11039460 TTAACAAAGATCTGCAT 11039444 >seq12 Length=28800575 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || || ||| ||||| || |||||||| | | Sbjct 14035529 GATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCCAGCTGTTTACCAGCA 14035470 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || || || || || || || || |||||| |||| | Sbjct 14035469 AAGATAAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACA 14035410 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||||| || | || || ||||| || || || Sbjct 14035409 TTG-TCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTT 14035351 Query 138600 TACAAAAATCTGCATG 138615 |||||| ||||||||| Sbjct 14035350 TACAAAGATCTGCATG 14035335 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || || ||| ||||| || |||||||| | | Sbjct 14046569 GATTCCTTTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCCAGCTGTTTACCAGCA 14046510 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| || || || || || || || || || ||| || |||| | Sbjct 14046509 AAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACA 14046450 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||| ||||| | || | || || || || ||||| || Sbjct 14046449 TTG-TCAATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTT 14046391 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 14046390 CACAAAGATCTGCATG 14046375 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || || ||| ||||| | |||||||| | | Sbjct 14079106 GATTCCTTTTGAATGTTGTAGTCTGCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCA 14079047 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| || ||||| || || || || || || ||| || |||| | Sbjct 14079046 AAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACA 14078987 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||| | || | || || ||||| || || || Sbjct 14078986 TTG-TCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTT 14078928 Query 138600 TACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 14078927 CACAAAGATCTGCATG 14078912 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || |||||| ||||| || || || |||| | Sbjct 14046797 GACTCCTTTTGGATGTTGTAGTCCGCCAGGGTACGCCCATCCTCAAGCTGCTTCCCGGCA 14046738 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || | ||| || || || || || ||||| ||||| ||| || || | Sbjct 14046737 AAAATAAGCCTCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACA 14046678 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||| || | || | || || |||||||| || || Sbjct 14046677 TTATCAATGGTGTCCGAGCTCTCCACTTCCAGAGTGATGGTCTTCCCAGTCAGGGTCTTC 14046618 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 14046617 ACAAAAATCTGCAT 14046604 >seq17 Length=6372654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | || | | | |||||||| ||||||||||||||| Sbjct 622413 GCCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 622354 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| |||| || ||||| || || || || Sbjct 622353 GAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGG 622294 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| |||||||| Sbjct 622293 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCAC 622234 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||| || | || || || || || ||||| || || |||||||||| Sbjct 622233 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTTTTCACGAAGATCTGCATGG 622184 >seq10 Length=31890735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||| || || || || || ||||| ||||| || || | | Sbjct 15231395 GACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCA 15231454 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | |||||| ||||||||||| || ||||| ||||| ||| |||| | || | Sbjct 15231455 AAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTC-CTGAATTTTAGCCTTCAC 15231513 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| ||||| | || | || || ||||| || || | Sbjct 15231514 GTTG-TCAATCGTGTCCGAGCTCTCGACCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCT 15231572 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 15231573 TGACAAAGATCTGCAT 15231588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496013890399920