Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq5 111 1e-19 seq10 102 7e-17 seq1 96.9 3e-15 >seq6 Length=44357769 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| ||||| || || || || |||||||| ||||||||| Sbjct 21860748 ATCCCTCCACGGAGGCGGAGCACCAGATGAAGAGTAGACTCTTTTTGGATGTTATAATCG 21860807 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | ||| ||||| ||| | |||| || |||||||||||| Sbjct 21860808 GCGAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGC 21860867 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||||||||| || |||| || | || | ||||| || ||| Sbjct 21860868 GGAATACCTTCCTTATCTTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGCTCTC 21860926 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | || |||||||| || || || || || || ||||| Sbjct 21860927 GACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 21860977 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || || || || || || |||||||| || ||||||||| Sbjct 21860976 ATGCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCG 21861035 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 21861036 GCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGG 21861095 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| |||||||| || || || |||| || | || | ||||| || ||||| Sbjct 21861096 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTC 21861154 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || | ||| | || |||||||| || || || || || || |||||| Sbjct 21861155 GACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 21861206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| ||||| || || || ||||| || |||||||| ||| Sbjct 21860520 ATCCCACCGCGAAGACGGAGCACCAGATGGAGGGTGGACTCCTTCTGAATATTATAGTCG 21860579 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || ||| |||||| | |||||||||||| Sbjct 21860580 GCAAGGGTCCTGCCGTCCTCAAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGC 21860639 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| || || || |||| || | ||| || || ||| Sbjct 21860640 GGAATCCCCTCCTTATCCTGGATCTTCGCCTTGACATTATCAATGGTATCCGAGCTCTCC 21860699 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||| || || || || || || ||||| || |||||| Sbjct 21860700 ACCTCGAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACAAAGATCTGCATC 21860750 >seq5 Length=51955539 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| |||||||| | | |||||||| || || || ||||| ||||| ||||| ||| Sbjct 10328041 TCCACCGCGGAGGCGGAGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 10327982 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | |||||||| ||| | || | || ||||||||||| || Sbjct 10327981 GAGGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 10327922 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| ||||| || || || || |||| || | || | ||||| || ||||||| Sbjct 10327921 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 10327863 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || | || ||||| || ||||| || || || || |||||| Sbjct 10327862 CCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATC 10327813 >seq10 Length=31890735 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | || || || || ||||||||||| |||||||| Sbjct 15231362 CCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCC 15231421 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| ||| ||||| || | ||||| || ||||||||||| ||| Sbjct 15231422 AGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 15231481 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || |||||||| || | || | || | ||||| || |||||| Sbjct 15231482 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCA-CGTTGTCAATCGTGTCCGAGCTCTCGAC 15231540 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || || || || || || ||||| || ||||| Sbjct 15231541 CTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 15231588 >seq1 Length=68435666 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || |||||||||||||| ||||| Sbjct 29766285 ATCCCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTTTGGATATTGTAATCC 29766344 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || |||| ||| || || ||| | |||| | |||||||||||| Sbjct 29766345 GCGAGAGTCCTCCCGTCCTCCAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 29766404 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| || || || || | || | || | ||||| || ||| Sbjct 29766405 GGAATCCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCCGAGCTCTC 29766463 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||| || || || ||||| || || || ||||||||| Sbjct 29766464 CACCTCGAGGGTGATCGTCTTACCCGTGAGAGTCTTCACGAAGATTTGCATC 29766515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||||||||| ||| || ||| | || || | ||| Sbjct 29766540 TGGAGGGTCGACTCCTTCTGGATATTATAGTCGGCGAGGGTCCTGCCGTCTTCAAGCTGT 29766599 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | | ||||||||||| || ||||| || || || || || || Sbjct 29766600 TTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 29766659 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | ||||| || |||||||| || || || | ||||||||||| Sbjct 29766660 GCCTTGA-CGTTGTCAATCGTGTCCGAGGACTCGACCTCCAGGGTGATGGTTTTGCCGGT 29766718 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || || |||||| Sbjct 29766719 GAGGGTCTTGACGAAGATCTGCATC 29766743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451776853747560