Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq67 147 3e-30 seq3 138 1e-27 seq4 86.0 8e-12 >seq67 Length=1088699 Score = 147 bits (162), Expect = 3e-30 Identities = 153/199 (77%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | ||| || ||||| ||||||||||||||||| ||| Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG--CG-GGACTTTGTATCAAACCACTTCAT 127707 | ||| || | || ||||| || |||||| || |||| |||| ||||| | Sbjct 292106 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC------TCAATCCACTGGAG 292159 Query 127708 CGCCCACTGTGCCTTTTTC 127726 ||||||||| ||||| ||| Sbjct 292160 CGCCCACTGGGCCTTCTTC 292178 >seq3 Length=60060032 Score = 138 bits (152), Expect = 1e-27 Identities = 313/458 (68%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT--CTCC 127288 |||||| ||||||| |||||||||||| || |||||||| | || |||||| |||| Sbjct 42479502 GTAGTCTCCGACCCTCTTCTCGAAGAAATTAGTCTTCCCTTGAAG--TGATATCAGCTCC 42479559 Query 127289 ATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGA 127346 || | || ||||| ||| | ||| || | || ||||| || | Sbjct 42479560 ATCCAGTCGAATGGATTCGCCACCCCGTACAACTT-TCCACATCCCAAAGCCAACAAG-A 42479617 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG-G 127405 | ||||||| ||| |||||||||||| |||| || |||||| || | || | Sbjct 42479618 GCCGATCCGCCACGAACTCAATGTACTGGCTCATCAAATCCCCGTTCATCCCCACCAGCG 42479677 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || |||||||| | | |||| || |||||||||||||||| || | ||| Sbjct 42479678 CCACC-GGCAGCGCGTCGCAAACGAACTCCCTCTCAATGTCCACAGCGTCGGCGATGATC 42479736 Query 127466 GCGTGAATAGTGTCCACCCC-AGGT--CTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | | || |||| || || | | ||| | | | | || ||| || || Sbjct 42479737 GACTTGATGCGGTCCTCCGAGAGCTTGCGGTTGAGGAGGGAGTAGAGGAGG--CAG-GCG 42479793 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||| |||||||| || |||||||| || || |||||| || || ||| Sbjct 42479794 AAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGC 42479853 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || || ||||||||||||||||||||| Sbjct 42479854 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCC 42479913 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || || || |||| || |||||||| || || Sbjct 42479914 TCAACGGCGGCAAATGCAACGAGGCGCTCGGCGAAAGA 42479951 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 8e-12 Identities = 225/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 || |||||||| || || || || || || |||| || || || | || || Sbjct 44157248 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 44157189 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 ||||||||||||||||| || ||||| | |||||||| | ||||||||| | | | Sbjct 44157188 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--ACCTC 44157131 Query 12855 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACG 12912 | | || | | | |||| | || || || ||||| || || | |||| ||| || | Sbjct 44157130 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGCAAG 44157071 Query 12913 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| || Sbjct 44157070 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 44157013 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 13029 ||||||||| ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 44157012 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 44156954 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || ||| || | || ||||| || ||||| Sbjct 44156953 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 44156917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613199978600760