Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 183 5e-41 seq67 114 2e-20 >seq3 Length=60060032 Score = 183 bits (202), Expect = 5e-41 Identities = 416/621 (67%), Gaps = 16/621 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || ||||| || | | ||||| ||||| | ||||||| | Sbjct 42479516 TCTTCTCGAAGAAATTAGTCTTCCCTTGAAGTGATATCAGCTCCATCCAGTCGAATGGAT 42479575 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || ||| | |||| | |||| || | || || ||||| || | Sbjct 42479576 TCGCCACCCCGTACAACTTTCCACATCCCAAAGCCAACAAGAGCCGATCCGCCACGAACT 42479635 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | ||||| | |||| || | ||| ||||||| |||| || || ||||| || Sbjct 42479636 CAATGTACTGGCTCATCAAATCCCCGTTCATCCCCACCAGCGCCACCGGCAGCGCGTCGC 42479695 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | |||||| ||||||| || || || |||| | ||| | || || || | | Sbjct 42479696 AAACGAACTCCCTCTCAATGTCCACAGCGTCGGCGATGATCGACTTGATGCGGTCCTCCG 42479755 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 |||||| | | || | | |||||||| || ||||||||||| || |||| Sbjct 42479756 AGAGCTTGCGGTTGAGGAGGGAGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 42479812 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| |||||||||| ||||||||| | | |||| |||||||||| |||||| |||| Sbjct 42479813 CGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGA 42479872 Query 160008 GCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| ||| | || || ||||||||||| ||||| ||||| || Sbjct 42479873 GCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAATGCA 42479931 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 ||||| | ||| | ||||| || || || | |||||| |||||||| ||| Sbjct 42479932 ACGAGGCGCTCGGCGAAAGACTCGGAGGACTC---GATCCACCGGAGGGCCCATTGGGCC 42479988 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACA 160186 ||||||| | ||| | | |||||||||| ||| | | || | || | | | Sbjct 42479989 TTCTTTGTCACCGCCGGGACGGTCTCGACGGCGCGAAAAAGGCGATCTTTTTCGTCCGGA 42480048 Query 160187 TCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 |||||||| |||| | || || |||||||| || | ||| | || ||||| Sbjct 42480049 TCCTTGAT----GTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGAATGTTCTCGAT 42480104 Query 160243 GGCCATCTGAAAGTTGTAGAA 160263 ||| || || ||| |||||| Sbjct 42480105 GGCGATTTGGAAGCCGTAGAA 42480125 >seq67 Length=1088699 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 291966 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 292025 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 | || |||||||||| || ||| |||||||| || |||| || ||| | ||| Sbjct 292026 GTCAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AACAGAAGGAGCCGGA 292084 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||||||||| || || | || |||||||| | ||| Sbjct 292085 GAAGAAGATCCCCTCAACAGCAGAGAAGGCCACGAGGCGCTC 292126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794757016094160