Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq14 109 4e-19 seq10 86.0 4e-12 >seq14 Length=24379743 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 ||| || || || | |||||| || | || | ||| |||||| || || || || || Sbjct 11039674 ATCACCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTC 11039615 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | | ||| |||| |||| || |||||| |||| || | ||||||||||| | Sbjct 11039614 TGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGG 11039555 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||||| ||| || ||||| | | | ||||| || | | | | ||||| | || | Sbjct 11039554 GGGTATGCCCTCCTTGTC-CTGAATCTTTGTCTTCACATTATCAATGGTGTCAGAACTCT 11039496 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| |||||||| || || |||||||| || || ||||||||||| Sbjct 11039495 CCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 11039444 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| ||||| || | || ||| || || || || ||||| |||| |||| || Sbjct 11039430 CGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 11039371 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || || |||| || | ||||||||| || | || | ||||| ||| Sbjct 11039370 TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTG 11039311 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || ||| || | | | | ||||| | ||| ||||| |||||||| || Sbjct 11039310 TCCTGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAAGTGATC 11039251 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || | ||| || || ||||||||||| Sbjct 11039250 GTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 >seq10 Length=31890735 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || ||||| || | ||| || ||||| || |||||||| || Sbjct 15231361 GCCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGC 15231420 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||| || || |||| || ||||||||||| |||| || Sbjct 15231421 CAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGG 15231480 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| | | |||| | | ||| | | | ||||| | ||| || | Sbjct 15231481 AATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGA 15231539 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || | || || || ||||||||||| Sbjct 15231540 CCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 15231588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347199999072413