Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq16 152 6e-32 seq67 131 2e-25 seq4 131 2e-25 seq15 82.4 9e-11 >seq3 Length=60060032 Score = 158 bits (174), Expect = 1e-33 Identities = 125/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | |||||||| |||||||| |||||||||||||| ||| Sbjct 42479951 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 42479892 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| | || | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 42479891 TTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 42479832 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| |||||||| |||||||| |||||| Sbjct 42479831 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 42479802 >seq16 Length=21371083 Score = 152 bits (168), Expect = 6e-32 Identities = 335/492 (68%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 17436926 TCAAAGCGTCCGGGCCTCAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 17436867 Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || || | |||||| || ||| || |||||||||||||||||||||||||||| |||| Sbjct 17436866 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 17436809 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 ||||||||| | ||||||||| || | ||| | | | |||| |||| || | Sbjct 17436808 GAGTTTGTTCTCTTTCATCATTTCCTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 17436749 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 16124 ||||||| ||||||| || || |||||||| ||| || | | ||| ||| ||| Sbjct 17436748 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 17436690 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || ||| || || || |||||||||||||| ||||| | | | ||| || Sbjct 17436689 TCACGAACTCGCGAAGCACCAACTCCAACAAACATCTCTACAAACTCAGACCCTGAA-AT 17436631 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 17436630 TGAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGT 17436571 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGT--A 16300 || || ||| | || || ||||| ||||| || || ||| | ||| | Sbjct 17436570 TCCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAA 17436514 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAAT 16360 ||| ||||||| ||| | ||| ||||| | ||| || || | |||||| | || | Sbjct 17436513 TCTTTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTAC 17436454 Query 16361 CCCCTCAACATC 16372 || ||||||| Sbjct 17436453 TCCAGCAACATC 17436442 Score = 122 bits (134), Expect = 1e-22 Identities = 220/318 (69%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || ||||| ||||| |||||||| || |||| ||||||||| | | Sbjct 21068975 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 21069032 Query 16035 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | ||| || | || ||| | ||||| ||||||||||| || |||||||| |||| Sbjct 21069033 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 21069092 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || | ||||| | || || || | |||||| ||||| || || || || Sbjct 21069093 AGGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCGACTCC 21069150 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||| || | |||||| || | | ||||| || || |||||| || | || || Sbjct 21069151 AACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAGGGCACCCCGGCCTCGCC 21069210 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||| ||||| || |||||||| || || || || ||| | | |||| || Sbjct 21069211 GGCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCC 21069270 Query 16271 TCGTGGAATCTTGGCGCC 16288 | || ||||||||||| Sbjct 21069271 TTTGGGGATCTTGGCGCC 21069288 >seq67 Length=1088699 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | || || | ||||||||| ||||||||||| || ||| Sbjct 292135 TCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCC 292076 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||| | || | |||||||||||||| || |||||||| || || |||||||||| Sbjct 292075 TTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAAC 292016 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 292015 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 291986 >seq4 Length=57251647 Score = 131 bits (144), Expect = 2e-25 Identities = 238/340 (70%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCA 15974 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 44157249 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 44157192 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| |||| ||||||||| | ||||||||| | | Sbjct 44157191 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 44157134 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || | | | |||| |||| || |||||||||||||| | || | ||||| Sbjct 44157133 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGC 44157074 Query 16093 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || ||| || || |||| ||| ||||| || || || || || ||||| Sbjct 44157073 AAGGCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACC 44157016 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | ||| |||| || || || ||| | ||||| Sbjct 44157015 AACAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCAC 44156957 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||| || ||| || | || || || || ||||| Sbjct 44156956 CAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 44156917 >seq15 Length=24314465 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || || ||||| || || || |||| || || | || | || Sbjct 15395120 ATCAAGAATTTCTGGTCGGTTCGTCGCAGCAATTACAATAACTCCACTGTCCCCACTGAA 15395061 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| || || | || ||||| | |||||||| | ||||||||| || | | Sbjct 15395060 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--CCT 15395003 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | |||| |||| || ||||||||||| ||||||||||| | ||| Sbjct 15395002 CCAATTCCAGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGACAT 15394943 Query 16095 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 16154 || |||| | || | ||| | ||||| || | | || || ||||| ||| Sbjct 15394942 GGAGAATTTGCTGTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGACA 15394883 Query 16155 AACATCTC 16162 |||||||| Sbjct 15394882 AACATCTC 15394875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620431555483920