Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq7 95.1 1e-14 seq3 91.5 2e-13 seq67 84.2 3e-11 >seq16 Length=21371083 Score = 107 bits (118), Expect = 2e-18 Identities = 314/473 (66%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || || || || || || |||||| ||||||| | ||| | ||| || || Sbjct 21068885 CGGTCAAATCGGCCAGGCCGCAGCAGAGCAGCATCAAGCACATCCGGCCTGTTGGTCGCT 21068944 Query 11563 GCAATGACTACAATG-CCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAGAAGCTG 11618 |||| || |||||| || || ||| | |||||| |||||||| || | ||||| Sbjct 21068945 GCAA-GA--ACAATGACCCCACT-ATTCCCCGAGAAACCATCCATTTCCGTCAAGAGCTG 21069000 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTCTTAC 11677 || || ||||| || | |||||| || | | | ||| ||| |||| | | | Sbjct 21069001 ATTAATAGTCTGCTCCCTCTCATCATTCCCACCTCCGAG-ACCGGCCCCCCGCTGCCTCC 21069059 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG-CCTGTTCG 11736 | || || |||||||| |||||||| || || || || || | || || ||| ||| Sbjct 21069060 CCACCGCATCAATCTCGTCGATGAAGACAATGCAGGGGGCTTTCG-ACTTGGCCTTCTCG 21069118 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || | || || ||||| ||||| || || ||||| | ||| ||||| | | ||| Sbjct 21069119 AACAAATCCCGGACACGAGAAGCTCCGACTCCAACGAAGAGCTCCACGAATTCGGAGGCG 21069178 Query 11797 GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | ||| | |||||| || | ||| || |||| ||| || || ||||||||||| Sbjct 21069179 GCGCACGAGAAGAAGGGCACCCCGGCCTCGCCGGCGACGGCCCGGGCCAGGAGAGTCTTT 21069238 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | ||| | | ||| ||| |||||||||||| || | | Sbjct 21069239 CCGGTGCCGGGAGGACCGACCAAGAGGCAGCCTTTGGGGATCTTGGCGCCCAAGGCGGTG 21069298 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || || || ||||| | |||||| || | ||||| || || |||||| Sbjct 21069299 TACTTGTCGGGGTTCTTCAAGAAGTCGACGACCTCCTGGAGCTCGAGCTTGGC 21069351 >seq7 Length=43454766 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||||| |||||||| || ||||||||||||||||| || || || |||||| Sbjct 13986246 GTATATGTTAGATGTGTAGGGCTCAAAACACTCATTGTTGCCAAGAATCTGACTAGTGGA 13986187 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||||||||| || ||||| ||||| Sbjct 13986186 AGCAGTGGGCATGGGAGCTATAAGAAGGGAGTTTC 13986152 >seq3 Length=60060032 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || |||||||||||||| || |||| || || |||||||| || Sbjct 42479803 TGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCA 42479862 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 42479863 CGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCG 42479922 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || || || | || ||||| || |||| ||| || |||| |||| ||| ||||| Sbjct 42479923 GCAAATGCAACGAGGCGCTCGGCGAAAGACTCG-GAGGACTCGATCCACCGGAGGGCCCA 42479981 Query 119687 GTTGGCCTT 119695 | |||||| Sbjct 42479982 TTGGGCCTT 42479990 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||| || | ||||||||| || ||||||||||||||||| || || || |||||| Sbjct 21221178 GTAGATATTCGACGTGTAGGGCTCAAAACACTCATTGTTGCCAAGAATCTGACTAGTGGA 21221119 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| || ||||| ||||| || ||||| ||||| Sbjct 21221118 AGCAGTTGGCATTGGAGCTATAAGAAGGGAGTTTC 21221084 >seq67 Length=1088699 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 291987 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCCG 292046 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||||| ||| || || || |||||||| ||||| ||| Sbjct 292047 CGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGCA 292106 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA--AGGTCGA-GACTTGTCGAACCACTTGAGAGCC 119684 | ||| || | || ||||| || || || ||| ||| || | ||||| ||| ||| Sbjct 292107 GAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC---TCAATCCACTGGAGCGCC 292163 Query 119685 CAGTTGGCCTT 119695 || | |||||| Sbjct 292164 CACTGGGCCTT 292174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588681062905800