Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq16 143 3e-29 seq4 125 8e-24 seq3 113 5e-20 seq67 107 2e-18 seq15 100 3e-16 seq7 89.7 6e-13 >seq16 Length=21371083 Score = 143 bits (158), Expect = 3e-29 Identities = 331/491 (67%), Gaps = 12/491 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 17436926 TCAAAGCGTCCGGGCCTCAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 17436867 Query 9255 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || || | |||||| || ||| || ||||||||||||||||||||||||| || |||| Sbjct 17436866 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 17436809 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 ||||||||| | ||||||||| || | ||| | | | |||| |||| || | Sbjct 17436808 GAGTTTGTTCTCTTTCATCATTTCCTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 17436749 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || ||||| ||||| ||| || ||| | | || |||| Sbjct 17436748 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGAT 17436689 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | || || || |||||||||||||| ||||| | | | ||| ||| Sbjct 17436688 CACGAACTCGCGAAGCACCAACTCCAACAAACATCTCTACAAACTCAGACCCTGAA-ATT 17436630 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 17436629 GAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTT 17436570 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTCCAAAGT--AT 9608 || || ||| | || || |||| ||||| || || ||| | ||| || Sbjct 17436569 CCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAAT 17436513 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATC 9668 || ||||||| ||| | ||| ||||| | ||| || || | |||||| | || | Sbjct 17436512 CTTTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTACT 17436453 Query 9669 CCCTCAACATC 9679 || ||||||| Sbjct 17436452 CCAGCAACATC 17436442 Score = 107 bits (118), Expect = 2e-18 Identities = 219/319 (69%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || ||||| || || |||||||| || |||| ||||||||| | | Sbjct 21068975 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 21069032 Query 9342 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | ||| || | || ||| | ||||| ||||||||||| || ||||||||||| | Sbjct 21069033 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 21069092 Query 9400 ATGGTTGATTTTCG--CGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || | ||||| ||| | || || | ||| || || | || || || || Sbjct 21069093 AGGG--GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCGACTCC 21069150 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||| || | |||||| || | | ||||| || || |||||| || | || || Sbjct 21069151 AACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAGGGCACCCCGGCCTCGCC 21069210 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | ||| ||||| || |||||||| || || || || ||| | | || |||| | Sbjct 21069211 GGCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGA-GGCAGC 21069269 Query 9578 CCGT-GGAATCTTGGCGCC 9595 | | || ||||||||||| Sbjct 21069270 CTTTGGGGATCTTGGCGCC 21069288 >seq4 Length=57251647 Score = 125 bits (138), Expect = 8e-24 Identities = 285/419 (68%), Gaps = 16/419 (4%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 44157249 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 44157192 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || |||| ||||||||| | ||||||||| | | Sbjct 44157191 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 44157134 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || | | | |||| |||| || |||||||||||||| | || | || | Sbjct 44157133 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCACAAAAATGATGC 44157074 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || ||| | | ||| ||||| || || | | || || ||||||| Sbjct 44157073 AAGGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAA 44157014 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | | | | ||| |||| || || || ||| | |||||| Sbjct 44157013 CAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCA 44156955 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 ||||| || ||| || | || || || || ||||| ||| || || ||||| Sbjct 44156954 GCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAACACCC 44156895 Query 9579 CGTGGAATCTTGGCGCC-ACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||| || || ||| | ||| | ||||| |||| ||| | || ||||| Sbjct 44156894 TTTGGAATCCGTGCACCTACTGC---AGTAAACCTCTCTGGTTTCTTCAAGAACTCCAC 44156839 >seq3 Length=60060032 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || || || || || || || |||||| || || ||||||||||| Sbjct 42479802 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 42479861 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| || || ||||||||||| ||||| || Sbjct 42479862 ACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 42479921 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| |||| |||||||||||||| || Sbjct 42479922 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 42479951 >seq67 Length=1088699 Score = 107 bits (118), Expect = 2e-18 Identities = 143/198 (72%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 291986 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 292045 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | ||||| || |||||||||||||| ||||| ||| Sbjct 292046 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 292105 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG--CGAGACTTTGTGTCAAACCATTTCATT 117462 | || || | |||||||| ||||||||| |||| | |||| ||| | | Sbjct 292106 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAG-----GACTCAATCCACTGGAGC 292160 Query 117463 GCCCATTTCGCCTTCTTC 117480 ||||| | ||||||||| Sbjct 292161 GCCCACTGGGCCTTCTTC 292178 >seq15 Length=24314465 Score = 100 bits (110), Expect = 3e-16 Identities = 172/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || || |||||||| || || |||| || || | || | || Sbjct 15395120 ATCAAGAATTTCTGGTCGGTTCGTCGCAGCAATTACAATAACTCCACTGTCCCCACTGAA 15395061 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || || | |||||||| | |||||||| | ||||||||| || | | Sbjct 15395060 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--CCT 15395003 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | |||| |||| || ||||||||||| ||||||||||| | |||| Sbjct 15395002 CCAATTCCAGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGACAT 15394943 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || |||| | || | | ||| | ||| | ||| || || || ||||| ||| Sbjct 15394942 GGAGAATTTGCTGTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGACA 15394883 Query 9462 AACATCTC 9469 |||||||| Sbjct 15394882 AACATCTC 15394875 >seq7 Length=43454766 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || ||||||||||||||||| ||||| || ||| | |||| |||||| || || Sbjct 13984708 GCAATTGATGCCAAATTGCACACAGCAGTTTCAGTAGGACTTGTGAACTCTATTATCTCA 13984649 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||| ||||| ||| ||| || ||||||| ||| | ||| ||||| ||| | ||||| Sbjct 13984648 GTACATAAGTTTGAAGACTTGATAGTCCCCAGATTTTGTTGATTACTTTTTCTATTGCAA 13984589 Query 106583 GCATCCT 106589 | ||||| Sbjct 13984588 GTATCCT 13984582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589685359739640