Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq40061 652 0.0 seq14 174 2e-38 seq1 154 2e-32 seq1239 123 3e-23 seq357 89.7 6e-13 seq4 86.0 8e-12 >seq40061 Length=156973 Score = 652 bits (722), Expect = 0.0 Identities = 747/999 (75%), Gaps = 4/999 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||| | ||| ||||| || | ||||| || || | || |||||| Sbjct 1146 TGGGGTCGCTTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTC 1087 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || || | ||| | |||||| |||| ||||| |||||||||| Sbjct 1086 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCAT 1028 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||||| || || || || ||||| || |||||||| || ||||||| || | || Sbjct 1027 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTA 968 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| || ||||||||||| || |||| |||| || || ||| | || || Sbjct 967 TGGAAACAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTT 908 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 ||||| || |||||||| ||||| |||| |||||| | || || || ||||||| | Sbjct 907 TTATCCGATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 848 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | ||||||||||||||||||||||| Sbjct 847 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 788 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || ||| |||||||||| || ||||| ||| || |||||||| ||||| || || | Sbjct 787 TAGTTTCCGCCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 729 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 | || ||||||| ||| | |||| ||| | |||||||| |||||||| | |||| Sbjct 728 CTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 669 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | | || || ||||| || ||||||| |||| |||| ||||| || || |||||||||| Sbjct 668 CTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCC 609 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | ||||| || || |||||| |||| ||||| ||||| |||||||| || || ||| | Sbjct 608 TTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 549 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| |||||| || | | ||||||||||||| || || Sbjct 548 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTG 489 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || ||||||| || |||||||| ||||| || || || ||||| ||||| |||| Sbjct 488 CTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG 429 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| ||||| |||||||| || ||||| | || | Sbjct 428 GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATT 369 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 ||||| |||| || |||||||| || || |||||||||||||| | || | || || | Sbjct 368 TCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTA 309 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| |||||||| || |||||||| |||||||| || | |||| |||| ||||||| Sbjct 308 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTG 249 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | ||||||||||||| || | |||| || ||| || ||||||||||| ||||| | Sbjct 248 TTATCAACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATG 189 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 180735 | |||||||||||||||||||| || ||||| || |||| Sbjct 188 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 572 bits (634), Expect = 2e-158 Identities = 721/985 (73%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 181454 GACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 181513 ||||| || || ||||| ||||||||||| ||| | || ||||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 181514 ATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCG 181573 | || || ||| | || || || |||||||| || || ||||| ||||| |||||||| Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 181574 TCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCT 181633 |||||| | || ||| |||||| | || || || || || || ||||| | | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 181634 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTG 181692 | | ||||| ||| || ||||| ||||| ||||| || || || ||||| || || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 181693 GGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGG 181752 | ||| | || || || ||| ||||||| || ||||| || | |||| || || || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 181753 TTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGA 181811 ||||||| | | ||||| ||||||||||| ||| | | | ||||| || ||||| | Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCA-ATTGCGACCTTATAATGCAA 33463 Query 181812 TTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGAC 181871 | || || || | ||| |||||||| || || |||||||| || || ||||| ||||| | Sbjct 33464 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTC 33523 Query 181872 AATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCT 181931 |||| |||||||||||||||| ||||| || || || || || || || ||| | |||| Sbjct 33524 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 33583 Query 181932 TCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTA 181991 || |||| || ||||||||||||||| | || || || ||||||||||| ||||| || Sbjct 33584 TCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAG 33643 Query 181992 TCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATC 182051 | | || | || | || | || ||||| |||| ||||| || |||||| | | Sbjct 33644 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 33703 Query 182052 AAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCT 182111 |||| |||||| |||||||| ||| || || | ||||||||| ||||| || | Sbjct 33704 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 33763 Query 182112 ATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATA 182171 |||||||||| || || |||||||| ||||| || ||||| || |||| ||| ||||| Sbjct 33764 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 33823 Query 182172 AGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCA 182231 | | ||||| |||||||||||||| ||||| || || | ||| | |||| ||| | Sbjct 33824 AACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 33883 Query 182232 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCA 182291 | || | | || || ||||| ||||| ||||| |||||||| || |||||||||||| Sbjct 33884 TTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCC 33943 Query 182292 GAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAG 182351 | ||| | ||||| || || || ||||| |||||||| || || || ||||| || |||| Sbjct 33944 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAG 34003 Query 182352 GTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGG 182411 || | ||||| ||| | || | ||||| || ||||| ||| || | |||||||||| Sbjct 34004 GTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 34063 Query 182412 AAGTATTACCCAGAGGTAACGCACT 182436 | || ||||| | || ||||| || Sbjct 34064 AGGTTCTACCCCGTGGAAACGCTCT 34088 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | | ||||||| | |||||||||||||| ||| Sbjct 110606 TTCCTCAGTAGCTCAGTGGTAGAGCGGTTGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 110547 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 110546 CCTACTTGGGGAG 110534 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | | ||||||| | |||||||||||||| ||| Sbjct 131560 TTCCTCAGTAGCTCAGTGGTAGAGCGGTTGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 131619 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 131620 CCTACTTGGGGAG 131632 >seq14 Length=24379743 Score = 174 bits (192), Expect = 2e-38 Identities = 245/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 181808 GCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTG 181867 || ||||| || || | ||| |||||||| || || ||| |||| || || ||||| || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 181868 GGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTT 181927 || | ||| |||||||||||||||| | ||| ||||| || | || || | ||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 181928 CTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCT 181987 || || |||| | ||| ||||||||||| | || || || ||||||||||| |||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 181988 GGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTG 182047 || | | || | || | || | || ||||| |||| ||||| || |||| | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 182048 TATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAA 182107 | |||| |||||| |||||||| ||| | || || | ||||||||| ||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 182108 ACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTT 182151 || ||| |||||| || | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 154 bits (170), Expect = 2e-32 Identities = 201/277 (73%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 180459 TACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTC 180518 || || || || |||||||| | ||| | |||||||| || | || | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 180519 TTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATG 180578 ||| |||| | |||||||| || | |||||||||||||| | | | || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 180579 GCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTG 180638 | || ||||| || | |||||| |||||||| || | |||| |||| || |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 180639 CTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAG 180698 |||| |||||| | || | |||| ||||| ||| ||||||||||| ||||| || Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 180699 CGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTG 180735 |||||||||||||||||| | || ||||| || |||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 >seq1239 Length=80461 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 181802 TACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTAT 181861 || ||||| || || || || | ||| |||||| | || || || ||||| |||| ||| Sbjct 69231 TATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTAT 69290 Query 181862 CCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGC 181921 || ||||| ||||| |||||||||||||| || | ||||| || || || || | Sbjct 69291 CCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATATTTTGA 69345 Query 181922 TTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGT 181981 ||| | |||||| |||| || ||||||||||||| | | || || || ||| ||| ||| Sbjct 69346 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGGA 69405 Query 181982 GTTGCTGG 181989 ||||| || Sbjct 69406 GTTGCCGG 69413 >seq357 Length=580603 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 182242 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGA 182301 ||| || ||||| ||||| ||||| |||||||| | |||||||||||| ||| |||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 182302 AGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCT 182340 ||| || || || ||||| |||||||| || || ||||| Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 527614 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 182036 GAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACT 182095 || |||||| | | |||| |||||| |||||||| ||| || || | ||||| Sbjct 3793182 GAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAACT 3793241 Query 182096 CAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGT 182155 |||| ||||| || ||||||||||| || || |||| ||| ||||| || ||||| || Sbjct 3793242 CAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTGGG 3793301 Query 182156 ATTGCGTTTAGCAATAA 182172 |||| ||| |||||| Sbjct 3793302 GTTGCTTTTTTCAATAA 3793318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610091136172440