Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq40061 488 6e-133 seq14 91.5 2e-13 seq1239 89.7 6e-13 >seq40061 Length=156973 Score = 488 bits (540), Expect = 6e-133 Identities = 676/944 (72%), Gaps = 2/944 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| ||||| |||||| | ||||| || |||| | || ||| | | ||| ||||| Sbjct 1097 TTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTCATT 1039 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || ||||| || ||||| || || || | |||||||| | ||| Sbjct 1038 ATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGT 979 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| || ||||||||||| || |||| | || |||||| Sbjct 978 TCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATC 919 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || || || || |||||||| ||| |||||||||| ||||| || ||||| Sbjct 918 GGTTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGC 859 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| || | | | | |||||| | ||||| | | |||||||| | Sbjct 858 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 799 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 798 GAGTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 739 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | ||||| ||||| ||||| | ||||| ||||||| || |||||| Sbjct 738 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCT 679 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| |||| || || |||||||||||||| ||| | || ||||| || || Sbjct 678 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAA 619 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || ||||| || |||||||| || |||||| || ||||| || | ||||| || || Sbjct 618 CACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCC 559 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || || || | | ||||| ||||| || || Sbjct 558 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAA 499 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 498 AACGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 439 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 438 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 379 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 |||| |||||| | || | || ||||| ||| || | ||||| || || | ||| Sbjct 378 TCCTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGT 319 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || | || ||||| |||||| | ||||||||||| || |||||||| || ||||| | Sbjct 318 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGT 259 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | || || |||| |||| | | || | || ||| | ||||||||| Sbjct 258 CAGGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAA 199 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 || ||||||||| | ||||| ||||||||||| ||||||||||| Sbjct 198 GTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 155 Score = 360 bits (398), Expect = 2e-94 Identities = 711/1047 (68%), Gaps = 39/1047 (4%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || || |||||| ||| || ||||| || || |||| |||||||| Sbjct 33076 TTTGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGC 33135 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||| || || || Sbjct 33136 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTT 33195 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || ||| | Sbjct 33196 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTG 33255 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTTC--TGTTCCTTT 170763 || || ||||||||||| |||| || ||| | | || | || | || | || | Sbjct 33256 ACCGCTGCAGTTTCCACTCCTG----CG-AATAGTTTAGCACATTCCTTGTTGCTACTAT 33310 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| ||||| |||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 33311 GGGGCCCTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTT 33370 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| || || ||||| |||||||| ||| | | ||||| || | | Sbjct 33371 TTGTTGCTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTG 33430 Query 170884 CAGGACTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 170941 | || ||| ||| | ||||||| || ||| |||||||||||||| || || || Sbjct 33431 CTCGATCTGT--GCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGT 33488 Query 170942 CTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATC 171001 || | | || ||||| |||||||| ||||| |||||||||| || || Sbjct 33489 TTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAG 33548 Query 171002 ATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 171061 || || || ||||| || ||||| | ||| | ||| | ||||| || || || || Sbjct 33549 TTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGAC 33608 Query 171062 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGC 171121 ||||| |||||||| |||||||| ||||| ||| || |||| | || | |||| || Sbjct 33609 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGC 33668 Query 171122 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAA 171181 ||||||||||| || || | || || || | ||||| || | Sbjct 33669 TATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGA---------------TGGT-- 33711 Query 171182 TAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAG 171241 | | |||| ||||||||||| ||| | || || || | ||||| ||||| Sbjct 33712 GACGGTGCAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTC 33767 Query 171242 TATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAG 171301 ||| | || || ||| | || ||||| || || ||||| ||||||| || || ||| | Sbjct 33768 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACG 33827 Query 171302 ATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGG 171361 | ||||| ||| ||||| | || || || || | ||| | |||| || | || Sbjct 33828 TTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGG 33887 Query 171362 TATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGC 171421 | || || || || || |||||| | || || || || || || ||||| || | || Sbjct 33888 GGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGC 33947 Query 171422 AGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 171481 ||| ||||| || || || |||||||||||||| || ||||| || | || |||||||| Sbjct 33948 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAGGTAT 34007 Query 171482 GAGAGCATGGATGTC--ATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAA 171539 | || |||||| | |||| || || || ||||| ||| | ||||||| || || Sbjct 34008 TCGTGCTTGGATGGCGGCTCAG--GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAG 34065 Query 171540 GTGTTACCAAGAGGTAACGCACTTTAA 171566 || |||| | || ||||| |||||| Sbjct 34066 GTTCTACCCCGTGGAAACGCTCTTTAA 34092 >seq14 Length=24379743 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 170912 CGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACT 170971 |||| | |||||||||||| || || || || | || || ||||| |||||| | Sbjct 16929122 CGCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATT 16929181 Query 170972 AGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATAT 171031 |||| |||||||||| || || || ||||| ||| | || |||| | || Sbjct 16929182 GGGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCAT 16929241 Query 171032 CTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGC 171091 | | || | ||| | || | || || ||||| |||||||| |||||||| ||||| Sbjct 16929242 CCTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGC 16929301 Query 171092 AGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATT 171151 ||| || |||| | || | |||| || ||||||||||| || || |||| | ||| Sbjct 16929302 TGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGT--AGAAAATATT 16929359 Query 171152 GTAT--GAAGA 171160 ||| ||||| Sbjct 16929360 TTATTCGAAGA 16929370 >seq1239 Length=80461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 170902 GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTCTGA 170961 ||| ||| || ||| |||||||||||| | || || | || | | | || | | Sbjct 69226 GACTTTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCA 69285 Query 170962 TCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTT 171021 | |||||||| ||||| ||||||||||| ||||| || ||||| ||||| || | Sbjct 69286 TTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCACC--CA---GGTGTTGCAGCTATAT 69340 Query 171022 TTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGA 171081 || | | ||| | ||| | ||||| || || || | ||||| |||||||| ||| Sbjct 69341 TTTGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGA 69400 Query 171082 TGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGC 171133 ||| ||||| ||| || ||||| || | |||| | ||||||||||| Sbjct 69401 CGGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGC 69452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578922751950240