Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq40061 657 0.0 seq14 176 5e-39 seq1 170 2e-37 seq1239 120 3e-22 seq4 98.7 1e-15 seq357 93.3 5e-14 >seq40061 Length=156973 Score = 657 bits (728), Expect = 0.0 Identities = 743/990 (75%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | || ||| | ||||| || || |||| |||||||| ||| || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| ||||| |||||||| | ||||||| Sbjct 1077 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTC 1020 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || ||||||||||||||||| ||| | ||||| || | ||||| |||| Sbjct 1019 CTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACA 960 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || || || ||| | || || || || | Sbjct 959 ATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGA 900 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 | |||||||| ||||| ||||||| ||| | ||||| || ||||||| | || | | Sbjct 899 TATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 840 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | ||||||||||||||||||||||| || || Sbjct 839 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 780 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 | || |||||||||||||||||| |||||| || || || || |||||||| || | | Sbjct 779 GCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 720 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 | || ||| || |||| ||| | |||||||| |||||||| | ||||| | || | Sbjct 719 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 660 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| |||| | || ||||| || || ||||||||||| ||||| | Sbjct 659 TATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATC 600 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | || || ||| | || || ||||| ||||| ||||| || || |||||||| ||||| | Sbjct 599 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 540 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 164442 |||| |||| || ||| || | | |||||||| |||| || || || | Sbjct 539 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 164443 GTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTG 164502 |||||| || |||||||| |||||||| || || || || || ||||| ||||| |||| Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 164503 GTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 164562 | || ||||||||||||| ||| |||||||| || |||||||| || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 164563 CTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCA 164622 |||| |||||||| || || ||||||||||| || | ||| || || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 164623 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164682 |||| || |||||||| |||||||| || | | || ||||||||||||| |||||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 164683 CTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACG 164742 ||||||| || | |||| || ||| || ||||||||||| ||||| || ||||| | Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 164743 CTCACAACTTCCCTCTGGATCTCGCTGCTG 164772 |||||||||||||||| || || ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 598 bits (662), Expect = 5e-166 Identities = 728/986 (74%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 165224 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 165283 || |||||||||||||| || |||||||| || | || ||||| ||||||| | ||| Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 165284 ATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCA 165343 | || |||||| |||| || || ||||| | || |||||||| || || ||||| Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 165344 AGTTCCTATCTGGAGGGT-GCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAGACG 165401 ||||||||| |||| ||| |||| |||||| || || |||||||| ||||| || | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATA 33283 Query 165402 CTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGT 165461 | | | ||||| | |||| || ||||| |||||||| ||||||||||| | | Sbjct 33284 GTTTAGCACATTCCTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTT 33343 Query 165462 GGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTG 165521 || ||| | || || || ||| ||||||| || ||||| || | ||||| ||||| | Sbjct 33344 GGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAG 33403 Query 165522 GTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCT 165580 |||| ||| | ||||| || ||| | || || ||| | | | || || || ||||| Sbjct 33404 GTTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCAAT-TGCGACCTTATAATGCA 33462 Query 165581 ATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGT 165640 || || ||||||| ||| || |||||||||||| || || || || || || |||||| Sbjct 33463 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGT 33522 Query 165641 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTC 165700 ||||| ||||||| || || || ||| || || ||||| || || | ||| | ||| Sbjct 33523 CAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTC 33582 Query 165701 TTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGT 165760 ||| | ||||| || ||||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 33583 TTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 33642 Query 165761 ATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTAT 165820 | | || | ||| |||| | || || ||||||| ||| ||||| |||||| | | Sbjct 33643 GTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTC 33702 Query 165821 CAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACC 165880 |||||||||||| ||||||||| ||| || ||| || | ||||||| ||||| || Sbjct 33703 GAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACT 33762 Query 165881 TACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 165940 || |||||||| ||||| ||||| || ||||| || ||||| || |||| ||| ||| Sbjct 33763 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 33822 Query 165941 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCC 166000 || | ||||| |||||||||||||| ||||| || || | ||| | |||| ||| | Sbjct 33823 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 33882 Query 166001 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATC 166060 | || | | || || ||||| ||||| ||||| |||||||| || |||||||| ||| Sbjct 33883 CTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATC 33942 Query 166061 AGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAA 166120 | ||||| ||||| || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 33943 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAA 34002 Query 166121 GGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAA 166180 ||| ||||||||||| |||| | ||||| || ||||| ||| || | |||||||| Sbjct 34003 GGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAG 34062 Query 166181 GAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||| || | || ||||| || Sbjct 34063 GAGGTTCTACCCCGTGGAAACGCTCT 34088 >seq14 Length=24379743 Score = 176 bits (194), Expect = 5e-39 Identities = 258/364 (71%), Gaps = 1/364 (0%) Strand=Plus/Plus Query 165578 GCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTG 165637 || ||||| ||||||| ||| || |||||||||||| | || || || || || || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 165638 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTT 165697 |||| ||| ||||||| || || || ||| || || ||| | || || ||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 165698 CTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCA 165757 || || | ||| | || |||| ||||| ||||| || |||||||||||||| ||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 165758 GGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTG 165817 || | | || | ||| |||| | || || ||||||| ||| ||||| |||| | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 165818 TATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAA 165877 | |||||||||||| ||||||||| ||| | || ||| || | ||||||| ||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 165878 ACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGT 165937 || || |||||| ||| | || || ||||| || ||||| | |||| |||| | Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGC-TTTAAT 16929481 Query 165938 AATA 165941 | || Sbjct 16929482 ATTA 16929485 >seq1 Length=68435666 Score = 170 bits (188), Expect = 2e-37 Identities = 206/279 (74%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 164494 GTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACT 164553 |||| ||||| || |||||||| |||| || |||||||| || | || ||| || | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 164554 TCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGA 164613 ||||| | |||| |||||||| || | ||||||||||| || | || || || | Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTA 3686581 Query 164614 TGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 164673 || | || ||||| || | |||||| |||||||| || | | || ||||| || ||| Sbjct 3686582 TGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTG 3686640 Query 164674 TGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 164733 | |||| |||||| | || | |||| ||||| ||| ||||||||||| ||||| | Sbjct 3686641 TTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATG 3686700 Query 164734 AGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGCTG 164772 | ||||| |||||||||||| |||| || || ||||||| Sbjct 3686701 AACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 >seq1239 Length=80461 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 165572 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTAC 165631 || ||||| || || ||||||| ||| || ||| |||||||| ||| || |||| || Sbjct 69231 TATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTAT 69290 Query 165632 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGG 165691 || ||||||||||| |||||||| || || || || || ||||| || || | Sbjct 69291 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 69345 Query 165692 TTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGT 165751 ||| | |||||| | ||||| || ||||| |||| ||||| || |||||| ||| ||| Sbjct 69346 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGGA 69405 Query 165752 GTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 165800 ||||| || | | ||| ||| |||| | | || ||||||| || Sbjct 69406 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 69454 >seq4 Length=57251647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 165804 TAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTA 165863 |||| |||||| | | |||||||||||| ||||||||| ||| || ||| || | | Sbjct 3793180 TAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAA 3793239 Query 165864 CTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCG 165923 |||||| ||||| || || |||||||| ||||| |||| || ||||| || ||||| | Sbjct 3793240 CTCAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTG 3793299 Query 165924 GTATTGCGTTTAGTAATAA 165942 | |||| ||| ||||| Sbjct 3793300 GGGTTGCTTTTTTCAATAA 3793318 >seq357 Length=580603 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 166012 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGA 166071 ||| || ||||| ||||| ||||| |||||||| | |||||||| ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 166072 AGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCT 166110 ||| || || ||||| || |||||||| ||||| ||||| Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 527614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556645912944840