Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq40061 569 2e-157 seq1 113 5e-20 >seq40061 Length=156973 Score = 569 bits (630), Expect = 2e-157 Identities = 718/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| |||||| | ||| | ||||| |||| ||||||||||| || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| |||||| | || || |||||||| || Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | ||||| || | ||| ||||| | ||||||||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || |||||| | || || || || || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | |||||||||||||| ||||| |||||||| || | | | Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || ||||||||| | |||||||| | | | | Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||||| Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||||||| | |||||||| || || |||||||| ||||||||||| Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| || ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || ||||| | |||||| || || Sbjct 538 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||||||||| |||||||| |||||||| || || || ||||| || || || Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||||||||| || | | || |||||| | || Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| || || | ||||| |||| ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | | || || || || || |||||||| || || || | | ||| | || || Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | | || | || |||||||||||||||||||||||||| ||||| || Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 |||||||||||| |||||| |||| Sbjct 178 TCACAACTTCCCTCTAGACCTAGC 155 >seq1 Length=68435666 Score = 113 bits (124), Expect = 5e-20 Identities = 185/263 (70%), Gaps = 3/263 (1%) Strand=Plus/Plus Query 169212 GATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTT-CACTTCTTCCTAGCA 169270 |||| |||||| | ||| | ||||||||||| || | |||| || |||||| | || Sbjct 3686474 GATTGATCTTCTAATATACTAGTTTCAACAATTCTC-ATTTCTTACATTTCTTCTTGGCT 3686532 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 || | || || ||| || | ||||| || || | |||| |||| ||| | || ||| Sbjct 3686533 GTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATGACTTTTAAC 3686592 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | || | |||| | || |||||||| || || || | | || | || ||| Sbjct 3686593 CTAAATG-ATTTCAATTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTTATCAATACT 3686651 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 ||| ||| | | || | || || ||||||||||||||||||||||| ||||| ||| Sbjct 3686652 TGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAACGTAATGCT 3686711 Query 169451 CACAACTTCCCACTAGACTTAGC 169473 ||||||||| | |||||| |||| Sbjct 3686712 CACAACTTCTCTCTAGACCTAGC 3686734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564158948813280