Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq40061 479 3e-130 seq1 123 3e-23 seq1239 89.7 6e-13 >seq40061 Length=156973 Score = 479 bits (530), Expect = 3e-130 Identities = 699/988 (71%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 |||||| | ||| ||||| ||| | ||| | |||| |||| ||||||||||| | Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | ||||| | || |||||||| || ||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCT 1018 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||||||| | |||||| | | ||||| ||||| Sbjct 1017 CCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAAT 958 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || ||||||||||| || |||| | || || || ||| | || || || || || Sbjct 957 ATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATA 898 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| | || ||||| ||||| |||||||| ||||||||| || | | | Sbjct 897 TGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 838 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||||| | | ||| | | |||||||| | |||||||||| | | | Sbjct 837 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGC 778 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||| Sbjct 777 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 718 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || || | ||||| || ||||||||||||||||| |||| || Sbjct 717 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 658 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || ||||| |||||||| ||| | || ||||| || || || ||||| || |||||||| Sbjct 657 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCA 598 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGT 172419 || |||||| || ||||| || | || || || || ||||| || ||||| ||| Sbjct 597 TTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGT 538 Query 172420 TCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGA 172479 || || || || ||| | | ||||| || || |||||| ||||| || || Sbjct 537 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGT 478 Query 172480 TACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGT 172539 |||| ||||| ||||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 477 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGC 418 Query 172540 CGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 172599 || | |||||||| |||||| ||||||||| || | | || |||||| | || Sbjct 417 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCT 358 Query 172600 GTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 172659 | || ||||| ||| || | ||||| || || | ||||| |||| ||||| |||||| Sbjct 357 GCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 298 Query 172660 CTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACA 172719 || || |||||||| ||||||||||| || || || | | ||| || | || Sbjct 297 CTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACT 238 Query 172720 TGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCA 172779 |||| ||| | | || | || ||||| ||||||||||| ||||||||| | ||||| Sbjct 237 TGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCT 178 Query 172780 CACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||||| ||||||| ||| ||| Sbjct 177 CACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 338 bits (374), Expect = 7e-88 Identities = 705/1045 (67%), Gaps = 35/1045 (3%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || || |||||| ||| || |||||||| || | || |||||||| Sbjct 33076 TTTGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGC 33135 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| || || || Sbjct 33136 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTT 33195 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || || Sbjct 33196 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTG 33255 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTC--TTCTGTTCCTTT 173185 || || ||||| ||||| ||| ||| ||| | | || | || | || | || | Sbjct 33256 ACCGCTGCAGTTTCCACTCCT-GCG----AATAGTTTAGCACATTCCTTGTTGCTACTAT 33310 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| ||||| |||||||| || ||||||| ||| | || || || |||| | Sbjct 33311 GGGGCCCTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTT 33370 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| || || ||||| |||||||| ||| | ||||| || || | | Sbjct 33371 TTGTTGCTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTG 33430 Query 173306 CAGGACTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGT 173363 | || ||| ||| | ||||||| || ||| |||||||||||||| || || || Sbjct 33431 CTCGATCTGT--GCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGT 33488 Query 173364 CTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTC 173423 || | | || | || || ||||| || || |||||||||| || || Sbjct 33489 TTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAG 33548 Query 173424 ATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTAC 173483 || || || ||||| || ||||| | ||| | ||| | ||||| || || || || Sbjct 33549 TTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGAC 33608 Query 173484 ATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGC 173543 ||||| |||||||| |||||||| ||||| ||| || |||| | || | ||||| || Sbjct 33609 GTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGC 33668 Query 173544 CATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGG 173603 ||||||||||| || || |||| | | | ||| || || || ||| || Sbjct 33669 TATTCATGGTGCTACCGT--AGAAAATACTTTAT---------TC-GAAGATGGTGACGG 33716 Query 173604 TAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAG 173663 | | | || ||| | || ||| | || || || | ||||| |||||| Sbjct 33717 T---------GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTC 33767 Query 173664 TATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAG 173723 ||| | || || ||| | || ||||| || || ||||| | || ||||| || ||| | Sbjct 33768 AATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACG 33827 Query 173724 ATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGG 173783 | ||||| ||| | ||| | || ||||| || | ||| | |||| | | || Sbjct 33828 TTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGG 33887 Query 173784 TATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGC 173843 | || || || || || ||||| | || || ||||| || || ||||| || | || Sbjct 33888 GGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGC 33947 Query 173844 AGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTAT 173903 ||| |||||||| || || |||||||||||||| || ||||| || | || |||||||| Sbjct 33948 AGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAGGTAT 34007 Query 173904 GAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGT 173963 | || |||||| | || ||||| || ||||| ||| | |||| || || || || Sbjct 34008 TCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 34067 Query 173964 GTTACCAAGAGGTAACGCACTTTAA 173988 |||| | || ||||| |||||| Sbjct 34068 TCTACCCCGTGGAAACGCTCTTTAA 34092 >seq1 Length=68435666 Score = 123 bits (136), Expect = 3e-23 Identities = 204/286 (71%), Gaps = 15/286 (5%) Strand=Plus/Plus Query 172529 GTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTT-CAC 172587 |||| ||||| || | |||||| | ||| || ||||||||| || | |||| || Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTC-ATTTCTTACAT 3686520 Query 172588 TTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACA 172647 |||||| | || |||| ||||| ||| || | ||||| || || | |||| |||| Sbjct 3686521 TTCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACT 3686580 Query 172648 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAG 172707 ||| | || ||||| || | |||||| ||||||||||| ||||| || || || || Sbjct 3686581 ATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATC---TGTAGTTG---ACCGTCAG 3686633 Query 172708 A-TTGT----TCC-TACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTT 172761 | |||| || ||| ||| ||| | | || | || || || ||||||||||| Sbjct 3686634 AGTTGTGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTA 3686693 Query 172762 ATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTG 172807 ||||||||| | ||||| ||||||||| | ||||||| ||| ||| Sbjct 3686694 ATGCATGAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 >seq1239 Length=80461 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/232 (69%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 173324 GACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCATCTTTTTAA 173383 ||| ||| || ||| |||||||||||| | || || | || | | | || || | Sbjct 69226 GACTTTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCA 69285 Query 173384 TCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCT 173443 | || ||||| || || ||||||||||| ||||| || ||||| ||||| || | Sbjct 69286 TTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCACC--CA---GGTGTTGCAGCTATAT 69340 Query 173444 TTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGA 173503 || | | ||| | ||| | ||||| || || || | ||||| |||||||| ||| Sbjct 69341 TTTGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGA 69400 Query 173504 TGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGC 173555 ||| ||||| ||| || ||||| || | ||||| | ||||||||||| Sbjct 69401 CGGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGC 69452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587756726010960