Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq40061 625 3e-174 seq14 196 5e-45 seq1 140 4e-28 seq1239 129 7e-25 seq4 86.0 7e-12 >seq40061 Length=156973 Score = 625 bits (692), Expect = 3e-174 Identities = 738/994 (74%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || || | ||| | ||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || || || || |||||||| || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || ||||||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | |||||||| ||||| |||||||| || ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 || ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | | Sbjct 778 CCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 720 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || |||| ||| | |||||||| ||||||||| | ||||| || || | Sbjct 719 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 660 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 | |||||| ||||||| |||| |||| ||||| || || |||||||| || ||||||| Sbjct 659 TATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATC 600 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | || |||||||||||||| || ||||| ||||| || || || |||||||| ||||| | Sbjct 599 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 540 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| ||||| || ||| | || | || || ||||||| || || || | Sbjct 539 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 |||||| ||||||||||| ||||| || || || ||||| || || |||||||| || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 | || ||||||||||||||||| |||||||| || |||||||| || |||||| | | Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 |||| || |||||||| |||||||| || | |||| ||||||||||||| | |||| Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 | ||||| || | | || ||||| | ||||||||||| ||||| || || |||| Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 163343 CTCACAACTTCCCACTTGACCTGGCAGCTGCCGA 163376 ||||||||||||| || ||||| || |||| ||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTGTCGA 146 Score = 533 bits (590), Expect = 2e-146 Identities = 737/1023 (72%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||| ||| | | | || |||||||| ||| | || |||||||| Sbjct 33076 TTTGATATTATGGATGATTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGC 33135 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||||||| | || | || || ||| |||| ||||||||||| Sbjct 33136 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGTACAACTTTT 33195 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| ||||||||| |||| | ||||||| | || ||| ||||| | Sbjct 33196 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTG 33255 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTT-CTTCTCTGGGG 163859 || || || || || || ||||| | | | | ||||| ||| || || || ||||| Sbjct 33256 ACCGCTGCAGTTTCCACTCCTGCGAATAGTTTAGCACATTC-CTTGTTGCTACTATGGGG 33314 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 |||||||| || || ||||| || ||| ||| | || || || |||| |||||| Sbjct 33315 CCCTGAGGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGT 33374 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || ||||| || | || | || || ||||| ||| | || ||||| ||||||||||| Sbjct 33375 TGCTCTCCATGGTGTTTTCGGACTAATAGGTTTTATGTTACGTCAATTCGAACTTGCTCG 33434 Query 163980 C-CTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 ||| || ||| |||| || ||||| || || ||||||| ||| |||||||| || Sbjct 33435 ATCTG--TGCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTT 33492 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || || ||||||||||| |||||||||| || || |||| Sbjct 33493 GTTTCTGTATTCCTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTT 33552 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || ||||| || || ||||| || | ||| | ||||| |||||||| ||||| ||| Sbjct 33553 GGCGTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGACGTTG 33612 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 ||||| || ||||||||||||||||| || || |||||| || |||||| |||||| Sbjct 33613 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCTGCTCTGCTATGCGCTATT 33672 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 || || | || || |||||||| || | |||||||| || ||||| || || Sbjct 33673 CATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACATTCCGT 33732 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 || ||| | | || || | |||||||||||||| ||||||||||| |||||||| ||| Sbjct 33733 GCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGCTTTTGG 33792 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||| | ||| Sbjct 33793 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 33852 Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457 || || || | ||| |||||| || |||| | | ||||| ||||| || || Sbjct 33853 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTC 33912 Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517 ||||| || || || || ||||| || | ||||| ||||||||||| || |||||| Sbjct 33913 CGTGCCTATGACTTCGTTTCCCAAGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 33972 Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577 ||||| ||||| || ||| | || |||||||| | ||||| ||| | || | || Sbjct 33973 TTCTACACCAAAAATATCCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAGGAT 34032 Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| || || ||| || | ||||| || || || || || | || || || |||| Sbjct 34033 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 34090 Query 164636 AAT 164638 ||| Sbjct 34091 AAT 34093 >seq14 Length=24379743 Score = 196 bits (216), Expect = 5e-45 Identities = 257/356 (72%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 164005 GCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTG 164064 || ||||| ||||||| ||| |||||||| || ||| | | || || || || || || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 164065 GGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTC 164124 |||| ||| |||||||||| || || |||||| || ||| | || || |||| || Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 164125 TTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCT 164184 | || | ||| | ||| |||| ||||| |||||||| || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 164185 GGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTG 164244 || || |||||| || |||||| |||||||| || | || || ||||||| || Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 164245 TATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 164304 | |||||||| || ||||| || || | || ||| | | || || | |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 164305 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTT 164360 |||||| ||||||||| | || ||| ||||| || ||||| | ||||| || Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGCTTT 16929478 >seq1 Length=68435666 Score = 140 bits (154), Expect = 4e-28 Identities = 204/285 (72%), Gaps = 5/285 (2%) Strand=Plus/Plus Query 163094 GTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACT 163153 |||| || || || ||||||||| ||||| | |||||||| || | || ||| || | Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATT 3686521 Query 163154 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--AC 163211 ||||| | |||| |||||||| || | ||||||||||| | ||| || | | || Sbjct 3686522 TCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTG--CTTTAAGTATTAGTAC 3686579 Query 163212 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 163271 ||| | || ||||| || | |||||| |||||||| || | |||| ||||| || | Sbjct 3686580 TATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTG 3686638 Query 163272 TGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCA 163331 ||| | || || ||| | || | | || | || | | ||||||||||| ||||| Sbjct 3686639 TGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCA 3686698 Query 163332 CGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCCGA 163376 || || ||||||||||||||| | || ||||| || |||| ||| Sbjct 3686699 TGAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTGTCGA 3686743 Score = 138 bits (152), Expect = 1e-27 Identities = 317/469 (68%), Gaps = 9/469 (2%) Strand=Plus/Plus Query 162905 ACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCT-TCGGTGGTTCA 162963 ||||||| || ||||||| | ||||||||||||| || |||| | | | ||| Sbjct 30149905 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGAATATAGCAACTTCT 30149964 Query 162964 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAA 163023 | |||||||| || | ||||| |||| || | | | | || || || ||| || Sbjct 30149965 -TATTCAGTGCTATCAATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 30150023 Query 163024 ACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTC 163083 | |||||| || | ||||||| ||| |||||| ||| || || | || || || Sbjct 30150024 AATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTA 30150083 Query 163084 GCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGT 163143 | |||||||||| || || | || |||| | |||||| |||||||| || || Sbjct 30150084 GGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGT 30150143 Query 163144 TCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGG 163202 ||||| || || || | ||||| |||| || ||||| |||| ||| | || || Sbjct 30150144 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGC--TTTA 30150201 Query 163203 CGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 163260 ||| ||| || ||| | || ||||| || |||||||| | |||||| | | | || Sbjct 30150202 CGTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGAC 30150261 Query 163261 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGC-AGGTTTGGGTAT 163319 ||||||| ||| | | || || | | || | | || | || | ||||| ||| Sbjct 30150262 AATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGA-TAT 30150320 Query 163320 GGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCA 163368 |||||| ||| | || | ||||||||||||||||| || ||| | ||| Sbjct 30150321 GGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGACATAGCA 30150369 >seq1239 Length=80461 Score = 129 bits (142), Expect = 7e-25 Identities = 163/224 (73%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 163999 TACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTAC 164058 || ||||| || || ||||||| ||| |||||| | || ||| || || |||| || Sbjct 69231 TATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTAT 69290 Query 164059 CCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGA 164118 || ||||||||||| ||||||||||| || || || || ||||| || || || Sbjct 69291 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 69345 Query 164119 TTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178 ||| || | ||| | ||||| |||||||| |||| |||||||| || ||| ||| |||| Sbjct 69346 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGGA 69405 Query 164179 GTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGG 164222 ||||| || || |||| || |||||| ||||||| || Sbjct 69406 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 69449 >seq4 Length=57251647 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 164233 GAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACA 164292 |||||||| || | |||||||| || ||||| || || || ||| | | || Sbjct 3793182 GAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAACT 3793241 Query 164293 CAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGT 164352 || | |||||||||||||| ||||||||||| |||| ||| ||||| || ||||| || Sbjct 3793242 CAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTGGG 3793301 Query 164353 GTTGCGTTTT 164362 ||||| |||| Sbjct 3793302 GTTGCTTTTT 3793311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557304782842200