Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq40061 645 4e-180 seq14 165 9e-36 seq1239 116 4e-21 seq357 102 9e-17 seq1 95.1 1e-14 seq155 89.7 6e-13 seq7 89.7 6e-13 seq4 82.4 9e-11 >seq40061 Length=156973 Score = 645 bits (714), Expect = 4e-180 Identities = 733/990 (74%), Gaps = 2/990 (0%) Strand=Plus/Minus Query 167087 CTTTTGCGATTGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCT 167146 ||| ||| | ||| | ||||||||| | |||||||| || | || |||||||| ||| | Sbjct 1138 CTTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTT 1079 Query 167147 GATGATCCCTACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTC 167205 |||||||||||| || | | ||||| ||||| ||||| ||||||||| | | ||||| Sbjct 1078 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTC 1020 Query 167206 CTCCTGTGGACATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 167265 |||| || || || |||||||| || ||||||||| ||||||| || | ||||| |||| Sbjct 1019 CTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACA 960 Query 167266 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCA 167325 | || ||||||||||| || |||| ||||| ||||| ||| | || || ||||| | Sbjct 959 ATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGA 900 Query 167326 TCTGGGAAGCAGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAG 167385 | |||||||| ||| | | || |||||||| |||||||| ||||||| | || | | Sbjct 899 TATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTG 840 Query 167386 TTTTCCACTTCCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACC 167445 || | |||||| | |||| | | || |||||||||||||||||||| || || Sbjct 839 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 780 Query 167446 GTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTG 167505 | || ||||||||||| ||||| ||||||||| || ||||| || || || || ||| Sbjct 779 GCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 720 Query 167506 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTA 167565 |||| ||| | |||| ||| | |||||||| ||||||||| | |||||| | || | Sbjct 719 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 660 Query 167566 TCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 167625 | |||||||| ||||||| |||| |||| ||||| || || ||||||||||| ||||| | Sbjct 659 TATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATC 600 Query 167626 CCTTCCATATGCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACG 167685 | || || ||| | || || ||||| ||||||||||| || || |||||||| ||||| | Sbjct 599 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 540 Query 167686 GTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 167745 |||| |||| |||||| || | | |||||||| |||| || || || | Sbjct 539 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGG 480 Query 167746 GTTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCG 167805 |||||| |||||||| || ||||| || ||||| ||||| |||||||||||||| || | Sbjct 479 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 420 Query 167806 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGG 167865 | || ||||||||||||| || |||||||| || || || | || |||||||||| Sbjct 419 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGG 360 Query 167866 CAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCA 167925 | || |||||||| || |||||||||| |||| Sbjct 359 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 300 Query 167926 ACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTA 167985 |||| || |||||||| |||||||| ||| | |||| ||| ||| ||| | | Sbjct 299 ACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACA 240 Query 167986 CTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 168045 ||||||| || | |||| |||||| || ||||||||||| ||||| || ||||||| Sbjct 239 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATG 180 Query 168046 CTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 |||||||||||||||| ||||| ||||||| Sbjct 179 CTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 628 bits (696), Expect = 3e-175 Identities = 736/988 (74%), Gaps = 6/988 (1%) Strand=Plus/Plus Query 168511 GGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTG 168570 |||| |||||||||||||| || |||||||| || | || ||||| ||||||| | | Sbjct 33104 GGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCG 33163 Query 168571 CTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGG 168630 || | || |||||| |||| || || |||| || || |||||||| || || |||| Sbjct 33164 CTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGG 33223 Query 168631 CAAGTTCCTATCTGGAGGGC-GCAAACTTTCTT-ACTGCGGCAGTTAGTACTCCAGCAGA 168688 | ||||||||| |||| || |||| |||||| || || |||||| ||||| || | Sbjct 33224 CCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAA 33281 Query 168689 TTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAG 168748 | | | | ||||| | |||| || ||||| |||||||||||||||||||| | Sbjct 33282 TAGTTTAGCACATTCCTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCG 33341 Query 168749 ATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAAT 168808 ||||||||| | || || || ||| ||||||| || ||||| || | ||||| ||||| Sbjct 33342 TTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAAT 33401 Query 168809 CGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATG 168867 ||||| ||| | ||||| || ||||| || || ||| | | | || || || |||| Sbjct 33402 AGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCAAT-TGCGACCTTATAATG 33460 Query 168868 CTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGG 168927 | || || ||||||| ||| || |||||||||||| || || || || || || |||| Sbjct 33461 CAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGG 33520 Query 168928 GTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTC 168987 ||||||| ||||||| || || || ||| || || |||| || || |||||| | | Sbjct 33521 GTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCC 33580 Query 168988 TCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAG 169047 ||||| | ||||| || ||||| ||||| |||| ||||||||||||||||| || || | Sbjct 33581 TCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCG 33640 Query 169048 GTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGT 169107 | | || || | || |||| | || |||||||||| ||| ||||| |||||| | | Sbjct 33641 GAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTAT 33700 Query 169108 ATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGA 169167 |||||||||| |||||||| ||| || ||| || ||||| | || |||| Sbjct 33701 TCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGA 33760 Query 169168 CCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTA 169227 | ||||||||||| ||||| ||||| || ||||| || |||||||| |||| || | Sbjct 33761 CTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCA 33820 Query 169228 ATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTT 169287 |||| | ||||| |||||||||||||| ||||| || || | ||| | |||| ||| Sbjct 33821 ATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTG 33880 Query 169288 CCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGA 169347 | | || | | || || ||||| ||||| ||||| |||||||| ||||||||||| | Sbjct 33881 CTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAA 33940 Query 169348 TCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACG 169407 || | ||||| |||||||| || |||||||| ||||||||||| || |||||||| |||| Sbjct 33941 TCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACG 34000 Query 169408 AAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTG 169467 ||||| ||||||| ||| | || || ||||| |||||||| ||| || | ||||||| Sbjct 34001 AAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTG 34060 Query 169468 AGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||| || || ||||| || || || || Sbjct 34061 AGGAGGTTCTACCCCGTGGAAACGCTCT 34088 >seq14 Length=24379743 Score = 165 bits (182), Expect = 9e-36 Identities = 244/346 (71%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 168867 GCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTG 168926 || ||||| ||||||| ||| || |||||||||||| | || || || || || || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 168927 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTT 168986 |||| ||| ||||||| || || || ||| || || || | || || | |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 168987 CTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCA 169046 || || | ||| | || |||| ||||| |||| ||||||||||||||||| || || Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 169047 GGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTG 169106 || | || || | || |||| | || |||||||||| ||| ||||| |||| | | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 169107 TATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAG 169166 | |||||||||| |||||||| ||| | || ||| || ||||| | || ||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 169167 ACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 169212 || ||| |||||| ||| | || || ||||| || ||||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTG 16929468 >seq1239 Length=80461 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 168861 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTAC 168920 || ||||| || || ||||||| ||| || ||| |||||||| ||| || |||| || Sbjct 69231 TATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTAT 69290 Query 168921 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGA 168980 || ||||||||||| |||||||| || || || || || |||| || || || Sbjct 69291 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 69345 Query 168981 TTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGT 169040 ||| | |||||| | ||||| || ||||| |||| |||| ||||||||| ||| ||| Sbjct 69346 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGGA 69405 Query 169041 GTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTA 169089 || || || | || || || |||| | | |||||||||| || Sbjct 69406 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 69454 >seq357 Length=580603 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 169301 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGA 169360 ||| || ||||| ||||| ||||| |||||||| |||||||||| ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 169361 AGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCT 169399 |||||| || |||||||| ||||||||||| || || || Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 527614 >seq1 Length=68435666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 || ||||| || | |||||| |||||||| ||| | |||| || || ||| | Sbjct 3686587 TTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTTATC 3686645 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 ||||||| | || | |||| | ||| ||| ||||||||||| ||||| || ||| Sbjct 3686646 AATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAACGT 3686705 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTG 168075 ||||||||||||||| |||| ||||| ||||||| Sbjct 3686706 AATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 168979 GATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGG 169038 ||||| | |||||| | |||| ||| | ||| |||||| |||| |||||||||| |||| Sbjct 4804753 GATTCATCCTCTTCTTTCAAGAATTTCGTAATTGGACATTGAACTCATTTCATATAATGG 4804694 Query 169039 GTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGA 169098 || || || | || || | |||| | | |||||||||| ||| ||||| | Sbjct 4804693 TGGTTGCCGGAGTATTAGGCACTACTCTGCTATGCACTATTCATGGTGCTACCGTAGAAA 4804634 Query 169099 ATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTC 169136 ||||| | | ||||||||||| |||||||| ||| Sbjct 4804633 ATACTTTATTCGAAGATGGTGAAGGTGCAAATACATTC 4804596 >seq155 Length=683644 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 169321 GTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGT 169380 |||| ||||||| ||| ||||| || | | | |||||||| ||||||||||| | Sbjct 3650 GTGCCAATGACTTCATTTTTCAAGAAATTTGTGTAATAGAAGATCTTGAGTTTGAGACTT 3709 Query 169381 TCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATC 169440 |||| ||||| || ||| |||| || |||||| ||||||| ||| | | || || | Sbjct 3710 TCTATACCAAAAATATCTTCTTAAATGAAGGTATTCGTGCTTGGATGGTGGCTTCAGAGC 3769 Query 169441 AACCTCATGAGAACTTTGTGTTCC 169464 |||||||||| || || | |||| Sbjct 3770 AACCTCATGAAAATCTTATATTCC 3793 >seq7 Length=43454766 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169359 GAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGT 169418 |||||||| || |||||||| ||||| | ||| || |||||||| || |||| | ||||| Sbjct 40226800 GAAGATCCTGAATTTGAGACTTTCTATATCAAAAATATCCTCTTAAATGAAGATATTCGT 40226859 Query 169419 GCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTT 169478 || ||| | || || |||||||||||| | || || | ||||||||| | || || Sbjct 40226860 GCTTGGATGGCGGCTCAAGATCAACCTCATAAAAATCTTATATTCCCTGAGAAGGTTCTA 40226919 Query 169479 CCCCGAGGTAATGCCCT 169495 | | || ||||| || Sbjct 40226920 TCATGTGGAAATGCTCT 40226936 >seq4 Length=57251647 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 169093 TAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCA 169152 |||| |||||| | | |||||||||| |||||||| ||| || ||| || | Sbjct 3793180 TAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAA 3793239 Query 169153 CTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTG 169212 |||| | || ||||| ||||||||||| ||||| |||| || ||||| || ||||||| Sbjct 3793240 CTCAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTG 3793299 Query 169213 GTATTGCGTT 169222 | |||| || Sbjct 3793300 GGGTTGCTTT 3793309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560327268536400