Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq40061 504 1e-137 seq1 111 2e-19 >seq40061 Length=156973 Score = 504 bits (558), Expect = 1e-137 Identities = 692/967 (72%), Gaps = 0/967 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | ||| |||| ||||| ||||| | ||||| ||| | | | | Sbjct 1116 ACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 1057 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || ||||| | || ||||| ||||| ||||| || ||||| || || || Sbjct 1056 GCAACTTCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 997 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || |||||| |||||||| || | ||||| ||||| || ||||||||||| || | Sbjct 996 CGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATT 937 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 || | ||| || ||||| || || || || || || |||||||| ||| | ||||| Sbjct 936 CCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGAT 877 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 876 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 817 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | | | |||||| | |||||||| Sbjct 816 GCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATT 757 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || || | Sbjct 756 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATT 697 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| |||| Sbjct 696 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATG 637 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| || |||||||| || ||||| ||||| |||||||| ||||| ||| Sbjct 636 ATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCT 577 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 576 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 517 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || ||||||| ||||| |||||||| Sbjct 516 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAA 457 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 456 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 397 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | || |||||| | || || | ||||| | ||||| Sbjct 396 AGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATC 337 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| |||||||| || |||||||| |||||| Sbjct 336 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAAC 277 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || ||| ||| ||||| |||||||| || | | || | Sbjct 276 CAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGT 217 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||||||||| || ||||| |||||||||||||| ||||| | Sbjct 216 GCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTA 157 Query 216275 GCTGCTG 216281 ||||||| Sbjct 156 GCTGCTG 150 >seq1 Length=68435666 Score = 111 bits (122), Expect = 2e-19 Identities = 197/281 (70%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 216003 GTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT-CAC 216061 |||| ||||| || | |||||| |||| | ||||||||| || | |||| || Sbjct 3686462 GTTATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTC-ATTTCTTACAT 3686520 Query 216062 TTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACT 216121 |||||| | || | | ||||| | |||||||| ||||| | || | ||| Sbjct 3686521 TTCTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACT 3686580 Query 216122 ATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTG-GTAA 216180 ||| | || ||||| || | |||||| |||||||| ||||| || ||| | || | || Sbjct 3686581 ATGACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGAC-CGTCAGAGTTG 3686638 Query 216181 AGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCA 216240 ||||| ||||||| | || | | || | || |||||||||||||||||||| Sbjct 3686639 TGTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCA 3686698 Query 216241 CGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTG 216281 || ||||| |||||||||||| | ||||| | ||||||| Sbjct 3686699 TGAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744708491075280