Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq40061 630 9e-176 seq14 206 3e-48 seq1 158 1e-33 seq1239 134 2e-26 seq7 87.8 2e-12 >seq40061 Length=156973 Score = 630 bits (698), Expect = 9e-176 Identities = 722/965 (75%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 1110 AACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 1051 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| ||||| | || ||| | || || ||||| || ||||| || ||||| || || Sbjct 1050 -TCTGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 992 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || ||||||| || | ||||| ||||| || ||||||||||| || | || | Sbjct 991 ACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGAC 932 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | || || || || || |||||||| || || |||||||||| Sbjct 931 TTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTG 872 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || || ||||||| | || ||||| | |||||| | | || | || || Sbjct 871 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GC 815 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | ||||||| ||||||||||||||| || |||| | ||||||||||| ||||| Sbjct 814 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGC 755 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || ||||||| ||||| |||| ||| | || Sbjct 754 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGG 695 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| ||||| |||| ||||| | ||||| || || || ||||||| ||| | Sbjct 694 TCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGAT 635 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| || || |||||||| ||||||||||| || ||||||||||||||||| || Sbjct 634 TGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGG 575 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| || || || || ||||| ||||| ||||| ||||| || ||| | | Sbjct 574 TGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 515 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || ||||| | || || || ||||||| ||||||||||| ||||| Sbjct 514 CAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGA 455 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 || ||||| ||||| || || ||||| || || || || |||||||||||||| || Sbjct 454 AACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 395 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 |||||||| || |||||||| || |||||| | ||||| |||||||| || || ||||| Sbjct 394 TTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTG 335 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 |||||| || | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 334 GTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 275 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 || | |||| ||||||||||||| | ||||||||||| ||| | | || ||||| Sbjct 274 ATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGC 215 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | |||||||||||||| |||||||| ||||| || ||||||||||| ||||| || || Sbjct 214 TAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 155 Query 182777 TGCTG 182781 ||||| Sbjct 154 TGCTG 150 Score = 587 bits (650), Expect = 9e-163 Identities = 729/992 (73%), Gaps = 6/992 (1%) Strand=Plus/Plus Query 183211 GATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 183270 || || || || ||||| ||||||||||| || | || |||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 183271 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCT 183330 | || |||||| |||| || ||| ||||||| || ||||||||||||||| | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 183331 TCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGTCTCGACGCCTGCTGACGC 183389 ||||||| | |||||| || |||||| || || || || || || ||||| | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAA-TTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAG 33284 Query 183390 TATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTG 183449 | | | ||||| | || |||| ||||| |||||| | |||||||| ||| || || Sbjct 33285 TTTAGCACATTCCTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 183450 GTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGG 183509 ||| ||| | || || || |||| |||||| || ||||| |||| || | || || || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 183510 TTTCATGCTTCGACAGTTTGAACTTGCTCGCT-TGATTGGTATC-CGTCCTTACAATGCT 183567 ||| ||| | || || || ||||||||||| | || || || || ||||| ||||| Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGATCTG--TGCAATTGCGACCTTATAATGCA 33462 Query 183568 ATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGT 183627 || || ||||||| ||| |||||||||||||| ||||||||| || |||||||||||| Sbjct 33463 ATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGT 33522 Query 183628 CAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTG 183687 || ||| ||||||||||| || ||||| || |||||||| || ||| ||||| | | Sbjct 33523 CAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTC 33582 Query 183688 TTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGT 183747 ||| | || || || || || |||||||| ||||| || ||||||||||||||||| || Sbjct 33583 TTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 33642 Query 183748 ATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTAT 183807 || |||| | || || || | ||||| ||||||| || ||||| ||||| || | Sbjct 33643 GTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTC 33702 Query 183808 GAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACG 183867 |||||||| || ||||| |||||| || ||| | | ||||||| |||||||| Sbjct 33703 GAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACT 33762 Query 183868 TATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAAT 183927 ||||| ||||| || || || || || ||||| |||||||| |||||||| ||| |||| Sbjct 33763 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 33822 Query 183928 AAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCT 183987 || |||||||| || ||||||||| | ||||| || || | ||| | ||| | | || Sbjct 33823 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 33882 Query 183988 ATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATC 184047 |||| | | || || ||||| || || ||||| ||||| || || ||||| ||| Sbjct 33883 CTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATC 33942 Query 184048 AGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAA 184107 | ||||| |||||||| ||||||||||| |||||||| || || || || | || ||| Sbjct 33943 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAA 34002 Query 184108 GGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAG 184167 || | ||||| ||| | || || ||||| || ||||| || ||||||| || ||| Sbjct 34003 GGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAG 34062 Query 184168 GAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||| |||| | || || ||||||| ||| Sbjct 34063 GAGGTTCTACCCCGTGGAAACGCTCTTTAATG 34094 >seq14 Length=24379743 Score = 206 bits (228), Expect = 3e-48 Identities = 263/359 (73%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 183565 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 || ||||| ||||||| ||| |||||||||||||| | ||||||| || |||||| || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 183625 GGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TC 183681 |||| ||| ||||||||||| || | ||| || |||||| | || ||| || || Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 183682 CTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTT 183741 || || |||| | ||||| | || |||||||| ||||| || ||||||||||||||| Sbjct 16929243 CTTTTTTTCC--AAAGGTTT-TATAATTGGACGTTGAACCCATTTCATATGATGGGAGTT 16929299 Query 183742 GCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACA 183801 ||||| || |||| | || || || | ||||| ||||||| || ||||| |||| Sbjct 16929300 GCTGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATT 16929359 Query 183802 TTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAA 183861 || | |||||||| || ||||| |||||| | || ||| | | ||||||| ||| Sbjct 16929360 TTATTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAA 16929419 Query 183862 GAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTT 183920 ||||| ||| ||||| || | | || ||||| |||||||| | |||||| || Sbjct 16929420 GAGACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGCTTT 16929478 >seq1 Length=68435666 Score = 158 bits (174), Expect = 1e-33 Identities = 202/277 (73%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 182505 TACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTC 182564 || || || || ||||||||| |||| | |||||||| || | || ||| || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 182565 TTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATG 182624 ||| | |||| |||||||| || | ||||||||||| || | || | || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 182625 GCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTC 182684 | || ||||| || | |||||| |||||||| || | |||| ||||| || |||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 182685 CTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAG 182744 | || |||||| | ||| | | || | ||| ||||||||||||||| |||||||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 182745 CGTAACGCACACAACTTCCCACTAGATCTTGCTGCTG 182781 ||||| || ||||||||| | ||||| || ||||||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 127 bits (140), Expect = 3e-24 Identities = 306/459 (67%), Gaps = 3/459 (1%) Strand=Plus/Plus Query 182314 ACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTAT-TCGGTGGTTCA 182372 ||||||| || ||||||| | ||||||||||||| ||| |||| || | | ||| Sbjct 30149905 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGAATATAGCAACTTCT 30149964 Query 182373 CTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAG 182432 | || ||||| || | ||||| |||| || | | | | || || || ||| | Sbjct 30149965 -TATTCAGTGCTATCAATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 30150023 Query 182433 CAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTT 182492 | ||||| || | ||||||| ||| |||||| ||| || || |||| || || Sbjct 30150024 AATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTA 30150083 Query 182493 GCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGT 182552 | |||||||| | || || | || |||| | ||| || |||||||| || || Sbjct 30150084 GGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGT 30150143 Query 182553 TCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGG 182611 ||||| || || || | ||||| |||| || || || |||| ||| | || | | Sbjct 30150144 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGCTTTACG 30150203 Query 182612 TGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 182671 | || || ||| | || ||||| || |||||||| | |||||| | | | || Sbjct 30150204 TATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAA 30150263 Query 182672 TCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGA 182731 ||||||| ||| ||| || | | | ||| | | || | || | ||| |||||| Sbjct 30150264 TCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGA 30150323 Query 182732 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 ||| ||| |||| |||| || ||||||||||| ||||| Sbjct 30150324 AGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 30150362 >seq1239 Length=80461 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 183558 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTA 183617 ||| ||||| || || ||||||| ||| |||||| ||||||| |||||| | || || Sbjct 69230 TTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTA 69289 Query 183618 TCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG 183677 |||||||||||| ||| |||||||||||||| | || || ||||| || ||| | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATATTTTG 69344 Query 183678 ATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGG 183737 |||| | | ||| | || || || || || |||| ||| ||||| || ||| ||| ||| Sbjct 69345 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGG 69404 Query 183738 AGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTG 183784 |||||| || || |||| || || || | |||| ||||||| Sbjct 69405 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTG 69451 >seq7 Length=43454766 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 184057 GAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGT 184116 |||||||| ||||||||||| ||||| | || || || || | ||||||| | ||| Sbjct 40226800 GAAGATCCTGAATTTGAGACTTTCTATATCAAAAATATCCTCTTAAATGAAGATATTCGT 40226859 Query 184117 GCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTA 184176 || ||| | || || |||||||| ||| | ||| ||||||| || ||| |||| || Sbjct 40226860 GCTTGGATGGCGGCTCAAGATCAACCTCATAAAAATCTTATATTCCCTGAGAAGGTTCTA 40226919 Query 184177 CCTAGAGGCAATGCTCTTTGATG 184199 | | || |||||||||| ||| Sbjct 40226920 TCATGTGGAAATGCTCTTTAATG 40226942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611389685581800