Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq40061 648 0.0 seq1 134 2e-26 seq4 87.8 2e-12 >seq40061 Length=156973 Score = 648 bits (718), Expect = 0.0 Identities = 729/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| |||||||| | Sbjct 167 GGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCACGATTGATG 226 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| || |||| |||||| || || || || | | || ||||| || Sbjct 227 ATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTACAGATTGGTTGAAATTG 286 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||| || || || Sbjct 287 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAGATACCTACT 346 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| || || | |||||| ||||||||| |||||| ||| Sbjct 347 ACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTTGAAACTAGCATATTGG 406 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || |||||||| || |||||||||||||| || |||||| Sbjct 407 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 466 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| || || | ||||| || ||||| | ||| | | ||| Sbjct 467 CCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 526 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || ||| Sbjct 527 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCC 586 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| ||||||||||||||||| |||||||||||||| |||| |||| ||||| Sbjct 587 AACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGAATACAATCATGAAGTTG 646 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||||||| ||||| || | ||| || Sbjct 647 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAG 706 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 707 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 766 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| || || | ||||||||| ||||||||||||||| | | |||||| Sbjct 767 CGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 826 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| ||| || || | | | Sbjct 827 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCACTCATCAACAGAT 886 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || ||||| ||||| | ||| ||||| ||| | |||| | |||| Sbjct 887 GCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAGAAGTCGGAATAATGGCA 946 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || |||||||| || | |||||||||| ||||| ||||| ||||| ||| Sbjct 947 CCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTGGTTCACGAATACCATCA 1006 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || ||||| ||||| ||| || | | || Sbjct 1007 ATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACAGA-AGTTGCGGTCAATAA 1065 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| |||| || | |||||| | |||| ||| | Sbjct 1066 GGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTAT 1125 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 1126 CCAGTTGCAGAAG 1138 >seq1 Length=68435666 Score = 134 bits (148), Expect = 2e-26 Identities = 305/452 (67%), Gaps = 5/452 (1%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||| ||| | ||| ||||||||| ||| | || |||| | Sbjct 30150356 GGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAACTTACCATGATTGATG 30150297 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| | | || | | | |||| || | || ||| | | || ||| | || Sbjct 30150296 ATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTAGTTTGGTTGGAATTG 30150237 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || ||||| | ||| || || | || | ||||| ||| | || || || Sbjct 30150236 AAACCATTTAGGTTAAAAGTCATAGTACTGATACGTAAAGCAGGTAACTAGATACCGACT 30150177 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTG-GAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 | ||||||||||||| || || || | |||| | ||||||||| |||||| | Sbjct 30150176 GCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTGTTGAAACTAGCATATCG 30150117 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||||| | || || | || || ||| | |||||||||| |||||| ||| |||| Sbjct 30150116 TGAGATAAATCTGCCAAATAAACCATGGGCACCTACAATATTATGAGTTTCGTCTACTTG 30150057 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 || ||| ||||||| | || || |||||| || ||||| ||| | || | | Sbjct 30150056 ACTGAATCTGTAACCTTCATTAGTAGACTCATTTTTAGTGGTTTCCTTGATCAAAGTATA 30149997 Query 84344 AG-TGACAAGTGAACCATGCATTGCAGAGAAT-AGAGCTCCACCGAATACACCAGCAACT 84401 | || |||| ||||||| || ||| |||| ||| | | || |||| || | Sbjct 30149996 GGTTGCCAAG-GAACCATTGATAGCACTGAATAAGAAGT-TGCTATATTCACCGGCTCCA 30149939 Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTT 84433 |||||||||||| | ||||||| |||||||| Sbjct 30149938 CCCAACATGTGAGATGGATGCACGAGGATGTT 30149907 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 83987 GAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTAC 84046 |||||| || || |||||||| ||||| |||||||||||||| || | ||| | | Sbjct 3686720 GAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGATTAGCGCAATTGATGAT 3686661 Query 84047 ATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAA 84106 ||| | ||| ||||||| ||||| | || | || || | | || ||||| | ||| Sbjct 3686660 ATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTACAGATTGGTTGAATTGAAA 3686601 Query 84107 TCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCAC 84166 | |||| || ||||| | ||| || |||| || | ||||| ||||| || | || || Sbjct 3686600 T-CATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAGTGAACCAGATACTTACTAC 3686542 Query 84167 TGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAA 84226 |||||| |||||||||| || || | || || ||||||||| || ||| | ||| Sbjct 3686541 AGGCCAAACAGCCAAGAAGAAATGTAAGAAATGAGAATTGTTGAAACTAGTATATTAGAA 3686482 Query 84227 GAT 84229 ||| Sbjct 3686481 GAT 3686479 >seq4 Length=57251647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 84314 ATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAA 84373 |||||| | ||||| | |||||| | | || || | ||||||||||| ||| || Sbjct 12620827 ATTTTCAATGGTTTCACTAATTAGACTACAGGTCACTAAGGAACCATGCATAGCACTAAA 12620886 Query 84374 TAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTT 84433 ||| | || || | |||| || || ||||||||||||| ||| ||||||| ||| Sbjct 12620887 TAGGGAGTCATCGGAAACACTAGTGACATCCAACATGTGAAATTGATTCATAAGGTCGTT 12620946 Query 84434 ATGTTCCGCCTGGAAGACAAGCATGT 84459 |||||| |||||||| |||| | ||| Sbjct 12620947 ATGTTCTGCCTGGAATACAATCTTGT 12620972 Score = 82.4 bits (90), Expect = 9e-11 Identities = 88/116 (76%), Gaps = 3/116 (3%) Strand=Plus/Minus Query 84354 GAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGA 84413 ||| ||||||| ||| ||||| | || |||| |||| || || ||||||||||| Sbjct 12483653 GAAACATGCATAGCACTAAATAGGGAGTCATCGAAAACACTAGTTACATCCAACATGTGA 12483594 Query 84414 AAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGT 84469 || ||| ||||||| |||| ||||| |||||||| ||| || |||||||| || Sbjct 12483593 AATTGATTCATAAGGCTGTTGTGTTCTGCCTGGAATACA---ATCTAGTTGAAAGT 12483541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570987527603880