Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 105 8e-18 seq7 98.7 1e-15 >seq3 Length=60060032 Score = 105 bits (116), Expect = 8e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || | | ||| || ||||| ||| Sbjct 21218291 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATCGGCACAATGCCA 21218232 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| || || ||||||||| || | || | ||||||| || |||| Sbjct 21218231 TTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCGCGTATATTATGAACTGAA 21218172 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| || ||| | |||||| || || || ||||| ||| Sbjct 21218171 ACACCAATTCCTCCTGCAGACTTGCTTATGATAGCACATTCCTTCAGAGTGTCATAGATT 21218112 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 21218111 CCCTCAATACTATCATCTTTCAT 21218089 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| |||||||||||| || || |||||| | ||||| | || | ||| | Sbjct 21217964 AGTGCCTGCATTAAATAATGTAGGGGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 21217905 Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717 |||||| | ||||||||| ||||| | ||| || || || | || || | ||| | Sbjct 21217904 GTATGTTCTGAGAACAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACTCTCATCA 21217846 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 |||| | ||| || || || || | ||| | | |||||| ||||| ||| | || | Sbjct 21217845 ACATGTGTTGTGGCCTCTCTACTACTTTTCCAGAAACTTTCAAGAGATAAGATCTCTCAA 21217786 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || |||||||||||||| | || |||||| | |||| ||| || Sbjct 21217785 GAGTCTTAAAACCAAAATAATCATAATCAAAGTCCCTGTCATAAATTAT 21217737 >seq7 Length=43454766 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| ||||||||||||||||| |||||| | ||||| | || | ||| | Sbjct 13983080 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 13983021 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATT 48716 ||||||| | ||||||||| ||||| ||| ||| || || | || || | ||| Sbjct 13983020 ATATGTTCTGAGAACAGAATCAATATC--ATTCTTGTGGATTCCAACAGCAACTCTCATC 13982963 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | ||| || ||||| || | ||| | | |||||| || || ||| | || Sbjct 13982962 AGCATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCG 13982903 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || ||||||||||| |||| || |||||| |||||| ||| || Sbjct 13982902 AGAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 13982853 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || | | |||||| ||||| ||| Sbjct 13983412 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 13983353 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| || | || | ||||||| || |||| Sbjct 13983352 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 13983293 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || ||| | |||||| || | || ||||| ||| Sbjct 13983292 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 13983233 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 13983232 CCCTCAATACTATCATCTTTCAT 13983210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561827316992040