Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq40061 443 6e-120 seq1 86.0 2e-12 >seq40061 Length=156973 Score = 443 bits (490), Expect = 6e-120 Identities = 687/976 (70%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| |||||||| || | ||||||||||| || | ||||| || Sbjct 1128 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTGATGATCCCT 1069 Query 25871 TGCTTACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| || || | |||||||| || || || || ||||| Sbjct 1068 ACCTTATTGACCGCAACTTC-TGTATTCATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1010 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || ||||| |||||||| || || || | || ||||||||||| || || Sbjct 1009 TATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAATATTATCTC 950 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || ||||| | |||||||| ||||| |||||||| Sbjct 949 TGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGATATGGGAAGC 890 Query 26050 TGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108 |||| | | || |||||| ||||||||||||| || ||| | || ||| | | |||| Sbjct 889 -GGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACT 831 Query 26109 TCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAA 26168 ||||| | || ||||| || || | |||||||||| || | | || || | Sbjct 830 TCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGCCTGGGTA 771 Query 26169 TGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCT 26228 || | || ||||| |||||||||| |||| || | | || ||| || || |||| Sbjct 770 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 711 Query 26229 TAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTA 26288 | | || ||| | || ||||| ||||| |||||| |||||| | || || ||||||| Sbjct 710 TGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 651 Query 26289 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATA 26348 |||| ||||| ||| | |||||||| || ||||| || || || ||||| ||||| || | Sbjct 650 CTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCCATTTCACA 591 Query 26349 TGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGG 26408 || ||||| ||||| || ||||| || | || ||| ||||||||| || |||| Sbjct 590 TGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 531 Query 26409 TTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGT 26468 | || || | || ||||| || || | | || ||| || || | | Sbjct 530 TAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGGTTACAGAT 471 Query 26469 TTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAA 26528 | || ||||| ||||| || |||||||| || ||||| || || || ||||| |||| | Sbjct 470 TCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGA 411 Query 26529 TTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGC 26588 | || || ||||| ||||| || || ||||| | |||||||| | ||| |||||| Sbjct 410 TCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGCTGCTTGGC 351 Query 26589 CGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATG 26648 | || || || || ||| | || || | ||||| | || ||||| || |||||||||| Sbjct 350 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATG 291 Query 26649 GTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTG 26708 |||| || || ||||| || ||||| || | | || | || || ||||||| Sbjct 290 GTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACACTTGGGCTG 231 Query 26709 ATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACT 26768 || | | || || |||||||| || | ||||| ||||| || ||||||||||| |||| Sbjct 230 ATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCACAACT 171 Query 26769 TTCCACTTGACTTAGC 26784 | || || ||| |||| Sbjct 170 TCCCTCTAGACCTAGC 155 >seq1 Length=68435666 Score = 86.0 bits (94), Expect = 2e-12 Identities = 185/273 (68%), Gaps = 3/273 (1%) Strand=Plus/Plus Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTT-CATTT 26571 || ||||| |||| || || | ||| | ||||| || || | || |||| ||||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATT-TCTTACATTT 3686522 Query 26572 CTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAAT 26631 ||| | ||| |||||| || || | || ||| | || || | |||| | || || Sbjct 3686523 CTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTAT 3686582 Query 26632 GGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGAT 26691 | | ||||||||||||| ||| || || ||||| || ||||| || | | | | Sbjct 3686583 GACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGT 3686641 Query 26692 AATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGA 26751 || ||| ||| ||||| | | || | ||||| || || | ||||| ||||| || Sbjct 3686642 TATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGA 3686701 Query 26752 GCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| ||||| | || ||| |||| Sbjct 3686702 ACGTAATGCTCACAACTTCTCTCTAGACCTAGC 3686734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146656598675064