Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq40061 522 8e-144 seq1 96.9 1e-15 >seq40061 Length=156973 Score = 522 bits (578), Expect = 8e-144 Identities = 709/984 (72%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||||||||| || ||||| |||||||| |||||||| || | Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || ||||| || | || ||||||||||| || || | || | ||||| | Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTA 269 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || || || ||||||||||| | || | ||| | Sbjct 270 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 329 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | ||| || | || ||||||||||||| |||||||||||| || ||| | Sbjct 330 TGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGT 389 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 | || |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 390 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 449 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||| ||||| |||||| | || || || |||||| |||| |||| Sbjct 450 AAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTT 509 Query 36328 CACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCAC 36384 | | || || | |||| || |||| || ||||||||| ||||| | || | Sbjct 510 CCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGC 566 Query 36385 CGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCT 36444 ||||||| || || ||||| | ||| || || |||||||||||||| |||||||| |||| Sbjct 567 CGAATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCT 626 Query 36445 GAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAAC 36504 | || |||| ||| || |||||||| || || || || | |||||||||||||||||||| Sbjct 627 GGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAAC 686 Query 36505 TCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAAT 36564 | ||||| |||| |||||||| ||||| |||||| || ||||||||||| ||||||| Sbjct 687 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 746 Query 36565 AAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA 36624 | || ||| ||||| || | |||||| || | ||||||||||||| | || |||| Sbjct 747 ATGCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCA 806 Query 36625 AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 36684 |||| | | ||||| | ||||| | ||||| || | ||| || || || || | Sbjct 807 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 866 Query 36685 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 36744 |||||||||| || | | ||| |||||||| || || || || || | |||||| || Sbjct 867 ATAACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTG 926 Query 36745 TCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGA 36804 || | || | || || |||||||| || ||||||||||| |||| | || || | Sbjct 927 CAGAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAA 986 Query 36805 CAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATG 36864 | || |||||||||||||| ||||| || ||||| ||||||| || || || | ||| Sbjct 987 CTGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATA 1046 Query 36865 CTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGC 36924 | | ||| || || | | ||||||||| | || || ||||| || | || || | Sbjct 1047 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGAC 1106 Query 36925 GGTTGTTTGTACTTGTAACCCAGT 36948 |||| | || || || | ||||| Sbjct 1107 GGTTTTCAGTGCTGGTTATCCAGT 1130 >seq1 Length=68435666 Score = 96.9 bits (106), Expect = 1e-15 Identities = 193/281 (69%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || | ||||||||| || ||||| |||||||| |||||||| || | Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCT--TCCGTTGGAATCAAC 36085 | || | || | || |||| |||||| || || | || | || ||||| Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGG--TCAAC 3686622 Query 36086 GACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGC 36145 || || || ||||| | ||| | || || ||||||| |||||| | | | ||| Sbjct 3686621 TACAGATTGGTTGAATTGAAATCATTT-AGGTTAAAAGTCATAGTACTAATACTTAAAGC 3686563 Query 36146 GGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTA--AACTGCGGCTA 36203 || | ||| || | || |||||| |||||| ||||||||||| || || | | Sbjct 3686562 AGTGAACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGAAATGAG--AA 3686505 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 36244 || || || |||| ||| | |||||| | || ||||| || Sbjct 3686504 TTGTTGAAACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150382825174594