Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq40061 563 3e-156 seq1 129 2e-25 >seq40061 Length=156973 Score = 563 bits (624), Expect = 3e-156 Identities = 720/989 (73%), Gaps = 2/989 (0%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| ||||| || | || ||| ||||||||| | | | ||| | |||||| | Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTA 269 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || || || ||||||||||| || || | || | Sbjct 270 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 329 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGT 5429 | | ||| || | || || ||||||| ||||| |||||||||||| ||| ||||| Sbjct 330 TGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGT 389 Query 5430 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 5489 | || |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 390 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 449 Query 5490 ACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTT 5549 | |||||||||||||| |||||| | || || || ||| |||| |||| Sbjct 450 AAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTT 509 Query 5550 CACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGA 5609 | | || | ||| || || | |||||||||||| ||| | | || |||| Sbjct 510 CCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 569 Query 5610 ATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGA 5669 |||| ||||| ||||| | |||||| || |||||||||||||| |||||||| ||||||| Sbjct 570 ATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGA 629 Query 5670 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTC 5729 |||| | ||| ||||| ||||||||||| || || | ||||||||||||| |||||||| Sbjct 630 ATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTC 689 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 | || || | |||||| | || || || | |||| || || ||||| || ||||||||| Sbjct 690 CTTGACCAATAGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 748 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 749 GCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATG 808 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 ||| || | ||||| | |||||| | || | || | || || || |||||||| Sbjct 809 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 868 Query 5909 AGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 | ||| ||||| | | || |||||||| || ||||| || || || || || || Sbjct 869 AACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCA 928 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || | || | || ||| || || || || ||||||||||| |||||||| || | || Sbjct 929 GAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACT 988 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 |||||||| || || || || || ||||| || ||||| | ||| || | || ||| || Sbjct 989 GGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACA 1048 Query 6089 GTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGG 6148 | ||||||||| || | | || ||||| || ||||| ||||| || | || || ||| Sbjct 1049 GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGG 1108 Query 6149 TTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | ||||| || | ||||| ||||| Sbjct 1109 TTTTCAGTGCTGGTTATCCAGTTGCAGAA 1137 >seq1 Length=68435666 Score = 129 bits (142), Expect = 2e-25 Identities = 198/280 (71%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || | ||||||||||||||| ||||| ||||||||||||||||||| Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCT---AGAGTCAA 5306 | || || | || | || ||| | |||||| | ||| || || | ||||| Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGT---ATTGATAACACAACTCTGACGGTCAA 3686623 Query 5307 CGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAG 5366 | || || || ||||| || || | || || ||||||| |||||| || | | || Sbjct 3686622 CTACAGATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAG 3686564 Query 5367 AGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTAT 5426 || | ||| || | || || |||||| ||||| |||||||||||| | | || Sbjct 3686563 CAGTGAACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGAAATGAGAAT 3686504 Query 5427 TGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 5466 |||| || |||| ||| | |||||| | || ||||| || Sbjct 3686503 TGTTGAAACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152576980864446