Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq40061 509 5e-140 seq1 93.3 1e-14 >seq40061 Length=156973 Score = 509 bits (564), Expect = 5e-140 Identities = 703/979 (72%), Gaps = 6/979 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| |||||||| |||||||| || | || Sbjct 155 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 214 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| || | || ||||||||||| || || | || | ||||| || || Sbjct 215 GCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTACAGAT 274 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || ||||||||||| | || | ||| || | | Sbjct 275 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 334 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||||||||| ||| ||| || || Sbjct 335 CAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTTGAAA 394 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 395 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 454 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || || |||||| |||| ||||| | Sbjct 455 TCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 514 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 515 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 571 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| |||||||| ||||| || Sbjct 572 ACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGGAAT 631 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| || |||||||| || || || || | ||||||||||||||||||||| ||| Sbjct 632 ACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 691 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||||| ||||| |||||| || ||||||||||| |||||||| || Sbjct 692 TGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 751 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 752 ACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATGTAA 811 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 812 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 871 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 ||||| || | | ||| |||||||| || || || || || | |||||| || ||| Sbjct 872 CACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCTGCAGAA 931 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | ||| | || || || ||||| || ||||||||||| |||| | || || || || Sbjct 932 GTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAACTGGT 991 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||||| || || || | ||| | | Sbjct 992 TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATACAGAA 1051 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || || ||||| || | || || ||||| Sbjct 1052 GTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGACGGTTT 1111 Query 26410 TTTGTACTTGTAACCCAGT 26428 | || || || | ||||| Sbjct 1112 TCAGTGCTGGTTATCCAGT 1130 >seq1 Length=68435666 Score = 93.3 bits (102), Expect = 1e-14 Identities = 187/274 (68%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||| ||||||||| || ||||| |||||||| |||||||| || | | Sbjct 3686734 GCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGATTA 3686675 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCT--TCCGTTGGAATCAACGACTG 25570 || | || | || |||| |||||| || || | || | || ||||| || | Sbjct 3686674 GCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGG--TCAACTACAG 3686617 Query 25571 ACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAA 25630 | || ||||| | ||| | || || ||||||| |||||| | | | ||| || | Sbjct 3686616 ATTGGTTGAATTGAAATCATTT-AGGTTAAAAGTCATAGTACTAATACTTAAAGCAGTGA 3686558 Query 25631 GCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAA 25690 ||| || | || |||||| |||||| |||||||||||| | | ||| || | Sbjct 3686557 ACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTAAGAAATGAGAATTGTTGA 3686498 Query 25691 AGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 25724 | |||| ||| | |||||| | || ||||| || Sbjct 3686497 AACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151921292939636