Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14 120 2e-22 seq160 111 1e-19 seq71 102 6e-17 seq389 84.2 2e-11 seq19 84.2 2e-11 seq12 82.4 6e-11 >seq14 Length=24379743 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||| ||||| || | ||| | ||| | || |||| |||||| |||||||| Sbjct 11039634 TCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAG 11039575 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||| ||||| | ||| | |||||||||||| ||||||| || ||| | Sbjct 11039574 ATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTA 11039515 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| ||||| || || || || ||||| || ||| Sbjct 11039514 TCAATGGTGTCAGAACTCTCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACA 11039455 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 11039454 AAGATCTGCAT 11039444 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 11039214 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 11039155 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | ||| | || || | |||||| || ||||||||||| ||||| ||||| | || Sbjct 11039154 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGGG 11039095 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||||| ||| ||| | | | | ||||| ||| ||| Sbjct 11039094 ATGCCCTCCTTATCCTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAACC 11039035 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || | || |||||||| Sbjct 11039034 TCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 11038988 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| ||||||| |||||| || || || || || ||||| |||||||| | Sbjct 11039442 CCACCCCTCAGCCGCAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGCC 11039383 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | ||||| || ||||| || || ||||| || || | || Sbjct 11039382 AGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGGG 11039323 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||||| || ||| | | | | || || ||||||| Sbjct 11039322 ATTCCTTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACC 11039263 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || || |||| ||| || ||||| |||||||| Sbjct 11039262 TCCAAAGTGATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 11039216 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||||||| || | |||| || | || ||| ||||| || || || || | Sbjct 11038987 GCCCCCCCTTAGGCGGAGAACCAGGTGCAAGGTCGACTCCTTTTGGATGTTATAGTCTGC 11038928 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGG 48657 | | ||| | || ||||||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 11038927 CAAGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGG 11038868 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || | ||||| ||||| |||||| ||| ||| | | | | ||||| ||| | Sbjct 11038867 GATC-CCCTCTTTGTCCTGAATCTTAGCTTTCACATTATCAATGGTGTCTGAGCTCTCAA 11038809 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || || || | || || ||||| ||||||||| Sbjct 11038808 CCTCAAGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATC 11038759 >seq160 Length=614534 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||| ||| || || |||||||||||| |||||||||| | Sbjct 340268 CCACCCCTAAGCCTTAAAACCAGATGCAGTGTTGACTCTTTTTGAATGTTGTAATCAGCT 340209 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || ||||||||||| || ||||| |||| || |||||||| | ||| Sbjct 340208 AGGGTTCGACCATCTTCCAACTGCTTTCCAGCAAAAATCAATCTTTGTTGATCTGGGGGT 340149 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 340148 ATACCCTCCTTGTC 340135 >seq71 Length=983643 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||| || || || ||||||||||||||||||||||| | Sbjct 265293 CCACCCCTAAGCCTCAAAACCAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATCAGCT 265234 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||| || || ||||| |||| | || ||||| | ||| Sbjct 265233 AGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGGGGGT 265174 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 265173 ATCCCCTCCTTGTC 265160 >seq389 Length=334988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||| ||| | || |||||||||||| |||||||||| Sbjct 298513 CCACCCCTAAGCCTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCAGCC 298454 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | |||| | || |||||||| || || || || |||| || |||||||| | ||| Sbjct 298453 AAGGTTCGGCCATCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGGGGT 298394 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 298393 ATACCCTCCTTGTC 298380 >seq19 Length=4066982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| ||| |||| || || || ||||| ||||| ||||| |||| | Sbjct 710431 CCACCCCTGAGCCTCAAAACCAGGTGGAGAGTTGATTCTTTCTGAATGTTGTAGTCAGCT 710490 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | ||||| | || ||||||||||| || |||||||| || | ||| ||||| | || Sbjct 710491 AAGGTTCGACCATCCTCCAACTGCTTCCCTGCAAATATTAGCCTCTGCTGATCTGGAGGT 710550 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||| || Sbjct 710551 ATACCCTCCTTATC 710564 >seq12 Length=28800575 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || |||| || | || || || ||||||||| || ||||| || | Sbjct 14045738 GCCACCCCTGAGTCGCAGGACAAGGTGGAGTGTCGACTCTTTTTGGATGTTGTAGTCGGC 14045679 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | || | || |||| || || || ||||| || || | ||| ||||| | ||| Sbjct 14045678 CAAAGTGCGGCCATCCTCCAGTTGTTTTCCAGCAAAGATGAGCCTCTGCTGATCTGGGGG 14045619 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| |||||| || ||| | | | | || || ||| || Sbjct 14045618 AATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTATCAATTGTGTCAGAGCTCTCAAC 14045559 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| || || || | || || ||||| |||||||| Sbjct 14045558 TTCCAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 14045511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380751609716703