Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq40061 614 6e-171 seq1 156 5e-33 >seq40061 Length=156973 Score = 614 bits (680), Expect = 6e-171 Identities = 706/948 (74%), Gaps = 4/948 (0%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||||||||| |||||||||||| ||| | | ||| | || ||||| || Sbjct 1095 GGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTCATTATC 1036 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||| ||| | ||||| Sbjct 1035 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCT 976 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || ||||||||||| | |||| | ||| ||||| ||| Sbjct 975 CTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGT 916 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || ||||| || |||||||| ||| || ||||||||||||| || ||||| || Sbjct 915 TTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGT 856 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| | || | || | |||||| | | || | | ||| |||||| || Sbjct 855 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAG 796 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || |||| | ||||||||||||||||| ||||||||| || || || Sbjct 795 TGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 736 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || ||||| |||||| |||| ||| | |||||||| ||||||||| Sbjct 735 GTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGAT 676 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||| | || || ||||||||||| |||| |||| | || ||||| || || ||| Sbjct 675 GGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACAC 616 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTC 163080 |||||||| ||||| || || || ||| | || || || ||||||||||| || || || Sbjct 615 AACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTA 556 Query 163081 TTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||| | Sbjct 555 TTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAAC 496 Query 163141 GAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCT 163200 || || || ||||| | ||||| ||||| ||||| ||||| || || || ||| Sbjct 495 GAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCT 436 Query 163201 GCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCA 163260 |||||||| || ||||| || ||||||||||| ||||| ||||||||| || ||||| Sbjct 435 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCC 376 Query 163261 CTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTG 163320 | || |||||| | ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 375 TTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATT 316 Query 163321 TCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC--GCAG 163378 |||||||| |||||||| || |||||||| ||||||||||| || |||||| ||| Sbjct 315 AGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAG 256 Query 163379 GTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAG 163438 ||| || || |||||||| |||||| | || | || ||||||||||||| Sbjct 255 --GGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAG 198 Query 163439 TTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 | ||||| || |||||||||||||||||||| || ||||| ||||||| Sbjct 197 TAATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 150 >seq1 Length=68435666 Score = 156 bits (172), Expect = 5e-33 Identities = 205/280 (73%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 163210 TACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTC 163269 || ||||| || ||||||||| | ||| | ||||||||| || | || | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 163270 TTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATG 163329 ||| | |||| | ||||| || | |||||||||||||| | || | |||||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 163330 GCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG--CAG-GTGGTAAA 163386 | || ||||| || | |||||| ||||||||||| || |||||| ||| || || Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGT--- 3686639 Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446 || || ||||||| | |||||| | || | || |||||||||||||| ||||| Sbjct 3686640 GTTATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCAT 3686699 Query 163447 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 || |||||||||||||||||| | || ||||| ||||||| Sbjct 3686700 GAACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 113 bits (124), Expect = 5e-20 Identities = 309/464 (67%), Gaps = 11/464 (2%) Strand=Plus/Plus Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTAT-TCGGTGGTTCA 163077 |||||||||| |||| || | || ||| | || | || |||| || | | ||| Sbjct 30149905 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGAATATAGCAACTTCT 30149964 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 | || |||||||| | ||||| | | || | | || | |||| ||||| ||| | Sbjct 30149965 -TATTCAGTGCTATCAATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 30150023 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | ||||| || | ||||| | ||| | |||| ||| || ||| | || ||||| Sbjct 30150024 AATGAGTCTACTAATGAAGGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTA 30150083 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 | ||| ||||| | ||||| | || |||| | ||||| ||||||||| || || Sbjct 30150084 GGTGCCCATGGTTTATTTGGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGT 30150143 Query 163258 TCACTTCAC--TTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 || ||| || || || | ||||| | | || ||| | |||| ||| |||| | Sbjct 30150144 TC-CTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGCTTTAC 30150202 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACG 163375 || | |||||| | || ||||| || |||||||| | ||||||| | || ||| Sbjct 30150203 GTATCAGTACTATGACTTTTAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 30150262 Query 163376 --CAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA-CAGAGCAGGACTTGGTA 163432 |||| || | || ||| | | | | | |||||| | || || | | | ||| || Sbjct 30150263 ATCAGG--GTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGT-TTGATA 30150319 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 163476 ||||||| ||| | || ||||||||||||||||||| || ||| Sbjct 30150320 TGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGAC 30150363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552807835872840