Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq40061 560 1e-154 seq14 165 9e-36 seq1 143 3e-29 seq1239 113 5e-20 seq7 96.9 4e-15 seq4 91.5 2e-13 seq357 84.2 2e-11 >seq40061 Length=156973 Score = 560 bits (620), Expect = 1e-154 Identities = 719/989 (73%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||| | ||| |||| || | ||||| || || | || |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || | ||| | |||||| ||||| ||||| |||||||| | |||||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAA 163070 || || || ||||| || || ||||| || || ||||||| || | ||||| ||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 163071 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 163130 || ||||||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 163131 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 163190 |||||||| ||||| ||||||||||| | || || || ||||||| | || | || Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 163191 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATCG 163250 | |||||| | | || | | || ||||| ||||| ||||||||| | || Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 163251 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 163310 | | |||||||| || ||||| ||| ||||| || || ||||||||||| || | || Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 163311 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 163370 || ||| || |||| ||| | |||||||| ||||||||| | ||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 163371 CTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 163430 ||||| || ||||||| |||| |||| ||||| || || ||||||||||| ||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 163431 CTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATGG 163490 || || |||||||| || |||||||| ||||| || || || ||| || |||||||| Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 163491 CAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGG 163550 | || |||||| | || | || || ||||||| || || || || Sbjct 538 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 163551 TTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGG 163610 ||||| || |||||||| ||||| || || || ||||| || || ||||| || || || Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 163611 TCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGGC 163670 || ||||||||||||||||| |||||||| | | || |||||| |||| Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 163671 AGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAA 163730 || |||||||| || || |||||||| ||||| | || | || || ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 163731 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACAC 163790 ||| || |||||||| |||||||| || | |||| ||||||||||||| ||||||| Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 163791 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 163850 |||||| || | | || || ||| || ||||||||||| |||||||| ||||| || Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 163851 ACACAACTTCCCACTCGATCTTGCTGCTG 163879 ||||||||||| || || || ||||||| Sbjct 178 TCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 536 bits (594), Expect = 1e-147 Identities = 716/990 (72%), Gaps = 4/990 (0%) Strand=Plus/Plus Query 164637 GATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCC 164696 || || || |||||||| || |||||||| || | || |||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 164697 ATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCT 164756 | || |||||| |||| || ||| ||||||| || ||||| |||||||| | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 164757 TCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCT 164816 ||||||| | |||||| || || | || || || || || || ||||| || | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 164817 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTG 164875 | | ||||| ||| || ||||| ||||| |||||| | || ||| |||| || || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 164876 GTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 164935 ||| ||| | || || || |||| ||| || |||||||| |||| |||| ||||| || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 164936 TTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATC-CGTCCTTACAATGCTA 164994 ||| ||| | || || || || || || || || || || || ||||| ||||| | Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGA-TCTGTGCAATTGCGACCTTATAATGCAA 33463 Query 164995 TTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTC 165054 | || ||||||| ||| |||||||||||||| || ||||| || || |||||||||| Sbjct 33464 TCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTC 33523 Query 165055 AGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGT 165114 | || ||||||| || || || ||||| || ||||| || ||| ||||| | | | Sbjct 33524 AATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCT 33583 Query 165115 TCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTA 165174 || | ||||| || || || ||||| | ||||| || ||||||||||| ||||| || Sbjct 33584 TCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAG 33643 Query 165175 TCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACG 165234 | || || | || |||||| ||||||||||| | || || |||||||| |||| || Sbjct 33644 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 33703 Query 165235 AGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 165294 | ||||| || |||||||| || || ||| | | || || | |||||||||| Sbjct 33704 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 33763 Query 165295 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACA 165354 |||| ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || | Sbjct 33764 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 33823 Query 165355 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTA 165414 | || ||| | ||||| || ||| | ||||| || || | ||| | |||| || Sbjct 33824 AACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 33883 Query 165415 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCA 165474 |||| | | || || ||||| ||||| ||||| || || ||||| || || ||| Sbjct 33884 TTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATCC 33943 Query 165475 GAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAG 165534 | ||||| |||||||| ||||||||||| |||||||||||||| ||||| || || |||| Sbjct 33944 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAAG 34003 Query 165535 GACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAG 165594 | | ||||||||| |||| || ||||| || ||||||||| |||| ||||| || | Sbjct 34004 GTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 34063 Query 165595 AAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | || | || | || ||||| ||||||| Sbjct 34064 AGGTTCTACCCCGTGGAAACGCTCTTTAAT 34093 >seq14 Length=24379743 Score = 165 bits (182), Expect = 9e-36 Identities = 243/344 (71%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 164991 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTG 165050 || ||||| ||||||| ||| |||||||||||||| | ||||| || || ||| || Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 165051 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 165110 |||| || ||||||| || || || ||||| || ||| | || ||| |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 165111 TTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCA 165170 | || | ||| | || | || ||||| | ||||| || ||||||||||| ||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 165171 GGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTA 165230 || | || || | || |||||| ||||||||||| | || || ||||||| ||| Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 165231 TACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 165290 | ||| ||||| || |||||||| || | || ||| | | || || | |||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 165291 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 165334 |||||| ||||||||| | || ||| ||||| || ||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTT 16929466 >seq1 Length=68435666 Score = 143 bits (158), Expect = 3e-29 Identities = 201/278 (72%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 163603 TACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTT-CACTT 163661 || || || || ||||||||| ||||| | |||||||| | | |||| || || Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATT-CTCATTTCTTACATTT 3686522 Query 163662 CTTCCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCAT 163721 |||| |||| | |||||||| || | |||||||| ||||| | | | || || || Sbjct 3686523 CTTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTAT 3686582 Query 163722 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGT 163781 | | || ||||| || | |||||| |||||||| || | |||| ||||| || |||| Sbjct 3686583 GACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGT 3686641 Query 163782 GCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGA 163841 |||| |||||| | || | | || ||||| ||| ||||||||||| |||||||| Sbjct 3686642 TATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGA 3686701 Query 163842 GCGTAACGCACACAACTTCCCACTCGATCTTGCTGCTG 163879 ||||| || ||||||||| | || || || ||||||| Sbjct 3686702 ACGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 >seq1239 Length=80461 Score = 113 bits (124), Expect = 5e-20 Identities = 160/225 (71%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 164984 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTA 165043 ||| ||||| || || ||||||| ||| |||||| ||||||| ||| ||| | || || Sbjct 69230 TTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCATTTA 69289 Query 165044 CCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAG 165103 ||||||||||| || |||||||| || || || || || ||||| || ||| | Sbjct 69290 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTG 69344 Query 165104 ATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGG 165163 |||| | | ||| | ||||| || || || |||| | ||||| || ||| ||| ||| Sbjct 69345 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACGGG 69404 Query 165164 TGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGG 165208 ||||| || | || || || |||||| |||||||||| Sbjct 69405 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGG 69449 >seq7 Length=43454766 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 165483 GAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGT 165542 |||||||| ||||||||||| ||||| | |||||| ||||| || ||||||| | ||| Sbjct 40226800 GAAGATCCTGAATTTGAGACTTTCTATATCAAAAATATCCTCTTAAATGAAGATATTCGT 40226859 Query 165543 GCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAG 165597 |||||| |||| || |||||||| ||| |||| |||| ||||| | ||||| Sbjct 40226860 GCTTGGATGGCGGCTCAAGATCAACCTCATAAAAATCTTATATTCCCTG-AGAAG 40226913 >seq4 Length=57251647 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 165219 GAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACA 165278 |||||||| |||| ||| ||||| || |||||||| || || ||| | | || Sbjct 3793182 GAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACGTTCCGTGCTTTTAACCCAACT 3793241 Query 165279 CAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGC 165338 || | |||||||||||||| ||||||||||| |||| ||| ||||| || ||||| || Sbjct 3793242 CAAGCTGAAGAGACTTATTCAATGGTCACTGCTAACCACTTTTGGTCCCAAATCTTTGGG 3793301 Query 165339 ATTGCGTTTT 165348 |||| |||| Sbjct 3793302 GTTGCTTTTT 3793311 >seq357 Length=580603 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 165425 TGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGA 165484 ||| || ||||| ||||| ||||| || || ||| | || || ||| |||||||| Sbjct 527712 TGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCATTTCCCAAGAAATCCATGCAGCAGA 527653 Query 165485 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 165523 |||||| ||||||||||| |||||||||||||| || || Sbjct 527652 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCT 527614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562927565752680