Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq67 158 2e-33 seq3 150 3e-31 >seq67 Length=1088699 Score = 158 bits (174), Expect = 2e-33 Identities = 552/853 (65%), Gaps = 23/853 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||||||||| || || ||||| || ||||| |||||||||| | ||| || ||| Sbjct 291683 CTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATATCAACTC 291742 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCCA 47954 ||| | ||| || |||| || |||| |||| || |||| | ||| Sbjct 291743 CATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCG---CAC-CCCAACGCCCCCA 291798 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 || ||||||| ||| |||||||||||| ||| | ||||| || | | Sbjct 291799 AGAGCCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCACCA 291858 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||| ||||| || | || |||||| |||| || | || || || | | | Sbjct 291859 GCGCCACCGGCAACGCATCGCAGACGAACTCCCTCTCGATGTCGACAGCGTCGGCGATGA 291918 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | ||| | ||| ||| | | | |||| | ||| | || ||||| | ||||| Sbjct 291919 TTGACTTGATGCGATCCTCAGGGAGCTTGTGGTTGAGGAG---GGAGTAGAGGAGGCAGG 291975 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| || || | Sbjct 291976 CGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCG 292035 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || | ||| ||||| ||||||||||| | Sbjct 292036 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCC 292095 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATC 48313 |||| || || | ||| || ||| | ||| |||| || || | | || | ||| Sbjct 292096 CCTCAACAGCAGAGAAGGCCACGAGGCGCTCCGCGAAGGA---GTCCGAGGACTCA-ATC 292151 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAG 48373 || |||||||| | ||||||||| | || | |||||| | || || || Sbjct 292152 CACTGGAGCGCCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGCACGAAAA 292211 Query 48374 AG--CTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 || |||| || | | ||| | |||| |||| | ||||||| Sbjct 292212 AGGCGGTCTT--TTTCGTCAGGGTCTTTGATGTAGGATTCCAGCAAAAGAGAATACATCT 292269 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | || || || || |||||||| ||||||||||| | ||||| | || Sbjct 292270 CGGAGTGGATGTTTTCGATGGCTATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCAATCT 292329 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||| | | || ||||| ||| || || || || || || | Sbjct 292330 GGACGTCGGACATGAAGCGGGCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGA 292389 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT---TCCAGC 48608 |||| |||||||| || | ||| |||||||||| | ||||||| | | |||| Sbjct 292390 AGAAAGCAAGGACGTGGGAGATGAAGTGGCGCTCGTCGGGGGTGAGGGTGTGGAGCCAGT 292449 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | ||| | ||||| || || || | ||||||||||| |||| || || | Sbjct 292450 GGGGGAGGTCGGCGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCT 292509 Query 48669 TGTACATGCCCCA 48681 ||||||| |||| Sbjct 292510 TGTACATCTCCCA 292522 >seq3 Length=60060032 Score = 150 bits (166), Expect = 3e-31 Identities = 426/650 (66%), Gaps = 21/650 (3%) Strand=Plus/Plus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| |||| || | ||| || || | | ||| ||| | |||| ||| ||| | Sbjct 42479701 AACTCCCTCTCAATGTCCACAGCGTCGGCGATGATCGACTTGATGCGGTCCTCCGAGAGC 42479760 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||| | ||| | || ||||| | |||||| ||||| | ||| | ||| ||||| Sbjct 42479761 TTGCGGTTGAGGAG---GGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCG 42479817 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||||||| ||||||||||| ||| || ||||||| || | || ||||||||| Sbjct 42479818 CGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGAGCCAG 42479877 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || | ||| ||||||||||||||||| ||||| || || || || || ||| Sbjct 42479878 AAGATGGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAATGCAACGAGG 42479937 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 | ||| ||||||| || | || |||||| || ||||| | |||||||| Sbjct 42479938 CGCTCGGCGAAAGACTCG--GAGGACT-CGATCCACCGGAGGGCCCATTGGGCCTTCTTT 42479994 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCA 48400 | | || | ||||| | ||| || || || || || | |||||| | Sbjct 42479995 GTCACCGCCGGGACGGTCTCGACGGCGCGAAAAAG------GCGATCTTTTTCGTCCGGA 42480048 Query 48401 ACAT--AGGTAG----TGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 | | | |||| ||| || | ||||||||| ||||| | ||||| || ||| Sbjct 42480049 TCCTTGATGTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGAATGTTCTCGATGGCG 42480108 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 || ||||| ||||||||||| | ||||| | ||| || || | ||| | | Sbjct 42480109 ATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGATCTGGACGTCGGACATGAAGCGGACG 42480168 Query 48515 AGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 || ||||| ||| || || || || || || |||||||| |||| || | | Sbjct 42480169 GCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGAGATG 42480228 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAGCAT---TCCAGCCCTGTACGTCTTTGCCCAGGTCC 48631 || |||||||||| | |||||| | | |||| | | || || || || Sbjct 42480229 AAGTGGCGCTCGTCGGTGGTGAGGGTGTGGAGCCAGTGGGGGAGATCGCTGGAGAGATCG 42480288 Query 48632 ACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCA 48681 || || || | ||||||||||| |||| || || |||||||| |||| Sbjct 42480289 ACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACATCTCCCA 42480338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931066323306240