Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq67 165 2e-35 seq3 147 4e-30 >seq67 Length=1088699 Score = 165 bits (182), Expect = 2e-35 Identities = 430/648 (66%), Gaps = 17/648 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| ||| |||||||||||| ||| | || || || Sbjct 292522 TGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTCTCC 292463 Query 25540 AAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 ||| | | |||| || | || || ||||||| || || || || Sbjct 292462 GCCGACCTCCCCCACTGGCTCCACACCCTCACCCCCGACGAGCGCCACTTCATCTCCCAC 292403 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || ||||| || ||||| || || || || |||||| || || | ||| Sbjct 292402 GTCCTTGCTTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGCCCGCTTC 292343 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || ||| | ||||| |||||||| |||||||| ||||||||| Sbjct 292342 ATGTCCGACGTCCAGATTGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGAA 292283 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGA---CGTACATTACAGACGTCGCC 25773 || | ||||| ||| ||||| | ||| || || | ||||| | |||| | | Sbjct 292282 AACATCCACTCCGAGATGTATTCT---CTTTTGCTGGAATCCTACATCAAAGACCCTGAC 292226 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCG 25832 || | ||| || || ||| |||| ||||| || ||| || | || |||||| | Sbjct 292225 GAAAAAGACCGCCTTTTTCGTGCTGTCGAG-ACGGTCCCGGCGGTGGCGAAGAAGGCCCA 292167 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | ||||||| | | | | || | || | ||||| || || ||||| Sbjct 292166 GTGGGCGCTCCAGTGGATTGA--GTCCTCGGACTCC-TTCGCGGAGCGCCTCGTGGCCTT 292110 Query 25893 TGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 ||||||| ||||| ||||| ||| ||| || || ||||||||||||||||| | Sbjct 292109 CTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAA 292050 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || |||||| |||||| ||| ||||||||||||||| | | |||||||| || Sbjct 292049 GCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCT 291990 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 |||| | || || |||||||| |||||| | || | | |||||| | || | || Sbjct 291989 CCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCACAAGCTCCCTGAGGA 291933 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || | |||||| || ||||| || ||||||| |||||| Sbjct 291932 TCGCATCAAGTCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTT 291885 >seq3 Length=60060032 Score = 147 bits (162), Expect = 4e-30 Identities = 428/649 (66%), Gaps = 19/649 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 |||||||||||||||||||| ||| |||||||||||| ||| | ||||| || Sbjct 42480338 TGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCTGGACCGCCGAGGAGGTCGATCTCTCC 42480279 Query 25540 AAGGACATGGACGGCTGGT---ACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | || | | |||| || | || ||| ||||||| || || || || Sbjct 42480278 AGCGATCTCCCCCACTGGCTCCACACCCTCACCACCGACGAGCGCCACTTCATCTCCCAC 42480219 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 | | || ||||| || ||||| || || || || |||||| || || | ||| Sbjct 42480218 ATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTC 42480159 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | || || ||| | ||||| |||||||| ||||| || |||||||| Sbjct 42480158 ATGTCCGACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 42480099 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||| |||| || || || | ||||| | || | ||| Sbjct 42480098 AACATTCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACGAA 42480039 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTG 25835 | |||||| || ||| | ||| ||||| | | ||| || | | | |||||| | || Sbjct 42480038 AAAGATCGCCTTTTTCGCGCCGTCGAGACCGT-CCCGGCGGTGACAAAGAAGGCCCAATG 42479980 Query 25836 GGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| | ||||||| | | | ||| | || | |||||| || || || |||| Sbjct 42479979 GGCCCTCCGGTGGATCGAGTCCTCCGAGT----CTTTCGCCGAGCGCCTCGTTGCATTTG 42479924 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 | || || ||||| ||||| ||| || || || ||| ||||||||||||||||| || Sbjct 42479923 CCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCT-CCATCTTCTGGCTCAAGAAG 42479865 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| ||||| ||| ||||||||||||||| | |||||||| ||| Sbjct 42479864 CGTGGTCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCTCGCGACGAGGGCCTC 42479805 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || || |||||||| |||||| | || | | || ||| | |||| | Sbjct 42479804 CACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGC--TCTCGGAGG 42479750 Query 26074 ACCGTCTACAGT--ATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 |||| | ||| |||||| || |||||||| || |||| |||||| Sbjct 42479749 ACCGCATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTT 42479701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928379669355840