Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq40061 646 0.0 seq14 176 5e-39 seq1239 132 5e-26 seq1 118 1e-21 seq5 89.7 5e-13 >seq40061 Length=156973 Score = 646 bits (716), Expect = 0.0 Identities = 713/947 (75%), Gaps = 2/947 (0%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || ||||| || ||| | |||||||| ||| || ||| |||| || | ||||||| Sbjct 1095 GGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTCATTAT 1037 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||||||||| || || || || || || || ||||||||| |||| || Sbjct 1036 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTC 977 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || ||||||||||| || |||| | ||| || || || Sbjct 976 TCTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGG 917 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || || || || |||||||| || ||| ||||||||||| | ||||| || || Sbjct 916 TTTGCATTTTTATCCGATATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGG 857 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | |||||| | ||||| || | ||| ||||||||||| Sbjct 856 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 797 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || |||||| || |||||||||||||| ||||||||| || ||||| Sbjct 796 GTGGGAACTTAGTTTCCGCCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 737 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| |||||| ||||||| ||| | |||| ||| |||||||||| |||||||| Sbjct 736 TGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGA 677 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||| | || || || ||||| ||||||| ||| |||| |||||||| || || Sbjct 676 TGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACA 617 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| ||||| || || |||||| | ||||| |||||||| |||||||| || || Sbjct 616 CAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCT 557 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || || ||| || | | || ||||| |||| Sbjct 556 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAA 497 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 ||| ||| || || |||| ||||||||||| || |||||||| || || || || Sbjct 496 CGAATCTGCTAATGCGGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 437 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 |||||||| || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 436 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 377 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 ||| ||||||||| | ||||| |||||||| || || |||||||| || || | || | Sbjct 376 CTTACATTTCTTCTTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 317 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||||| ||||| ||||| |||||||| || | | ||| | || Sbjct 316 TAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCA 257 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 || || || ||||||| ||||| || | | || || || || ||||||||||| Sbjct 256 GGGTCGTGTTATCAACACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGT 197 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTG 9235 ||||| ||| | || || ||||||||||| || ||||| || |||| Sbjct 196 AATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 549 bits (608), Expect = 2e-151 Identities = 707/971 (73%), Gaps = 6/971 (1%) Strand=Plus/Plus Query 9845 GATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCA 9904 || || || |||||||| || |||||||| ||| | || ||||| ||||||| | || Sbjct 33106 GACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCT 33165 Query 9905 ATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGGTACACTCACGGACTTGCA 9964 | || || ||| |||| || || || ||||| || ||||| || || ||| | || Sbjct 33166 TTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTGGCC 33225 Query 9965 AGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTCTCAACGCCTGCTGATGCT 10024 ||| || | || ||| |||||| | || || || || || || ||||| || | Sbjct 33226 AGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGCAGTTTCCACTCCTGCGAATAGT 33285 Query 10025 ATGGGTCATTCTCTTCTT-CTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTG 10083 | | ||||| ||| || ||||| ||||| |||||| | || || ||||| || || Sbjct 33286 TTAGCACATTC-CTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTCGTTG 33344 Query 10084 GATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGG 10143 | || | || || || ||| ||||||| || ||||| || | |||| |||| || Sbjct 33345 GTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAATAGG 33404 Query 10144 CTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTAT 10203 ||||||||||| || || || || || ||| | | | |||||||| ||||| || Sbjct 33405 TTTTATGTTACGTCAATTCGAACTTGCTCGATCTGTGCAATTGCGACCTTATAATGCAAT 33464 Query 10204 CGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACA 10263 ||| || |||| || |||||||||||||| ||| ||||| || |||||||| || || Sbjct 33465 CGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCA 33524 Query 10264 GTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTT 10323 ||| |||||||||||||||| ||||| ||||| || || || || || ||| | ||||| Sbjct 33525 ATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATCCTCTT 33584 Query 10324 CCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTAT 10383 | |||| || ||||||||||||||| | || || || ||||||||||||||||| || | Sbjct 33585 CTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGT 33644 Query 10384 ACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTAT-- 10441 | | || | || || |||| || || || || | || ||||||| | ||||||| Sbjct 33645 ATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAA--ATACTTTATTC 33702 Query 10442 CAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACC 10501 ||||||| || ||||| || ||| |||||| | ||||||| |||||||| Sbjct 33703 GAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACT 33762 Query 10502 TATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAAT 10561 ||||| ||||| ||||||||||| || |||||||| || ||||| |||||||| |||| Sbjct 33763 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAAT 33822 Query 10562 AAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCT 10621 ||||| ||| | |||||||||||||| |||||||| || | ||| | |||| | || Sbjct 33823 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 33882 Query 10622 ATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATC 10681 |||| | | || || ||||| || || ||||| || || || || || ||||| ||| Sbjct 33883 CTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAAATC 33942 Query 10682 AGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTGAACGAA 10741 | || | |||||||||||||||||||| ||||| || || |||||||| | |||||| Sbjct 33943 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAACGAA 34002 Query 10742 GGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTCCCAGAA 10801 ||| ||||||| |||||||| | || || || || |||| | || | ||||| || Sbjct 34003 GGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCTGAG 34062 Query 10802 GAAGTTCTTCC 10812 || ||||| || Sbjct 34063 GAGGTTCTACC 34073 >seq14 Length=24379743 Score = 176 bits (194), Expect = 5e-39 Identities = 255/358 (71%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 10199 GCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTC 10258 || || || || |||| || |||||||||||||| | | ||||| || |||||| | Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 10259 GGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTT 10318 || | ||| |||||||||||||||| | ||| || || || | || || | ||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 10319 CTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCT 10378 || || |||| | ||| ||||||||||| | || || || |||||||||||||||||| Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 10379 GGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTT 10438 || || | || | || || |||| || || || || | || ||||||| | | || Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAA--ATATTT 16929360 Query 10439 TAT--CAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAG 10496 ||| ||||||| || ||||| || ||| | |||||| | ||||||| |||| Sbjct 16929361 TATTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAG 16929420 Query 10497 AGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTT 10554 |||| ||| ||||| ||| || || || |||||||| || |||| ||||||| Sbjct 16929421 AGACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGCTTT 16929478 >seq1239 Length=80461 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 10188 GACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCA 10247 ||| ||| ||||| ||||| || |||| || |||||| ||||||| || ||| ||| Sbjct 69226 GACTTTATAATGCAATCGCATTCTCTGTTCCAATTGCTATTTTTGTTTCCGTATTCTTCA 69285 Query 10248 TCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTT 10307 | |||||||| || || ||||||||||||||||| || | || || || || || | Sbjct 69286 TTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATAT 69340 Query 10308 TCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGA 10367 | | ||| | |||||| |||| || ||||||||||||| | | || || || ||| ||| Sbjct 69341 TTTGATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGA 69400 Query 10368 TGGGAGTTGCTGG 10380 ||||||||| || Sbjct 69401 CGGGAGTTGCCGG 69413 >seq1 Length=68435666 Score = 118 bits (130), Expect = 1e-21 Identities = 193/277 (70%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 8959 TACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTC 9018 || ||||| || ||||||||| ||||| | ||| ||||||||| ||| |||||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 9019 TTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGACCATG 9078 ||| | |||| |||||||| || | |||||||| || || | | | || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 9079 GCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACAAGGACGAGTG 9138 |||| ||||| |||| ||||| |||||||| || | | ||| | || | | || Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 9139 CTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGTCATGCACGAA 9198 |||| || ||| | || | | || |||| || ||||||||||| ||||| ||| Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 9199 AGAAACGCACACAACTTCCCGCTTGACCTTGCGGCTG 9235 | || || ||||||||| | || ||||| || |||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/217 (70%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 || |||| || |||||||| | | || |||||||| | ||||| || |||||| Sbjct 60436897 TTTTACCTAATATGGGAAGCGTGATATATTAATGAGTGGTTATACAATGGCA-TCCTTAT 60436839 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGT--CTTTGCTTATATGGGTCGTGAATGGG 8593 |||| | ||| | |||||| | |||| | ||| | || ||||||||||| |||| Sbjct 60436838 GAGCTAATTGTTCTACACTTCTTACTTGATCTAGCTTGG--TACATGGGTCGTGAGTGGG 60436781 Query 8594 AACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTG 8653 || || || |||| | || ||| |||||| ||||||||| || ||||||||| Sbjct 60436780 AAGTTAGTTTTTGCCTATGTATATGTCTTTGGATTGCTGTTGCATATTCAGCTCCTGTTA 60436721 Query 8654 CCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGG 8690 || ||| | || ||| ||| | ||||| || |||| Sbjct 60436720 CCACTGTTGCTATTGTTTTCTTGGTCTACCCAATTGG 60436684 >seq5 Length=51955539 Score = 89.7 bits (98), Expect = 5e-13 Identities = 171/252 (68%), Gaps = 10/252 (4%) Strand=Plus/Minus Query 8453 GCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGT 8512 |||||| || ||||| | || || |||| | |||||||| || ||| ||||||||| Sbjct 47822548 GCTCTA--GCCATTGGTTTGCATTTTCACCCGACATGGGAAGCAGCATCTATTGATGAGT 47822491 Query 8513 GGCTCTACAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTG 8572 || | || || || ||||| || |||| | ||| | |||||| | || | || | Sbjct 47822490 GGTTATATAATGGCGGTCCATATGAGCTAATTGTTCTACACTTCTTATTTCGTGTAGCTT 47822431 Query 8573 CTTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTG 8632 ||| || | || | | ||||||| || | | || |||| ||||||||| | Sbjct 47822430 GTTACATAGATCATAAGCAGGAACTTAGTTTCTATCAGGGTATGCATCCTTGGATTGCTA 47822371 Query 8633 TTG--------CATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCC 8684 ||| |||| || |||||| |||| |||||| |||| | ||| | ||||||| Sbjct 47822370 TTGCATATTGCCATATTCGGCTCCTATTGCAGCTGCTATTGCTATTTTCTTGATCTATCC 47822311 Query 8685 TTTTGGTCAAGG 8696 | || ||||||| Sbjct 47822310 TATTAGTCAAGG 47822299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 10265 TCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTC 10324 ||| ||| |||||||||||| | ||| |||| || || || || || ||| | ||||| Sbjct 12569946 TCTGGTTCGTTCTTTGCGCCCAATTTTAGCGTAGCAGCTATATTTCGATTCATCCTCTTT 12570005 Query 10325 CTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGG 10380 || | || ||||||||||| | | | || || || |||||||||||| ||| ||| Sbjct 12570006 TTCTAAGGGTTTCATAATTGAATGTTGAACCCATTTCATATGATGGGAATTGTTGG 12570061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516221366184000