Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq160 89.7 4e-13 seq389 86.0 5e-12 >seq160 Length=614534 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||||||||| ||| | || ||||| || || || |||||| Sbjct 340135 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTTGCTGGAAAGCAGTTGGAA 340194 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | ||| | || ||||| |||||||||||||| || || ||||| |||| ||| Sbjct 340195 GATGGTCGAACCCTAGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTTTTA 340254 Query 28767 AG 28768 || Sbjct 340255 AG 340256 >seq389 Length=334988 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||||||||| ||| | || || || || ||||| |||||| Sbjct 298380 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 298439 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| ||| |||| ||||| |||||||||||||| || || |||| |||| ||| Sbjct 298440 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 298499 Query 28767 AG 28768 || Sbjct 298500 AG 298501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425197098898119