Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq40061 713 0.0 seq1 167 3e-36 seq14 141 1e-28 >seq40061 Length=156973 Score = 713 bits (790), Expect = 0.0 Identities = 753/989 (76%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | |||||||| || ||||| ||||| |||| |||||||| || || Sbjct 1137 TTCTGCAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTCGGTGTTTTG 1078 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| ||||| || |||||| ||| |||||| Sbjct 1077 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTCATTATCGCCTTCATTGCTGCTCC 1019 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || ||||||||||| || ||||||| || | ||||||||||| Sbjct 1018 TCCAGTAGATATTGATGGTATTCGTGAACCAGTTTCTGGTTCTCTACTTTATGGAAACAA 959 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || ||||||||||| |||| || ||||| ||||||||| |||| || || || || Sbjct 958 TATTATCTCTGGTGCCATTATTCCGACTTCTGCAGCTATCGGTTTGCATTTTTATCCGAT 899 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | ||||| || ||||||| | || |||| Sbjct 898 ATGGGAAGCGGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 839 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | ||||||||||||||||||||||||| || ||| Sbjct 838 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 779 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 ||||| ||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 778 CCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 719 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| || |||| ||| | |||||||| ||||||||||| |||||| | || || Sbjct 718 TGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 659 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 |||||||| ||||||| |||| |||| ||||| || || |||||||| || ||||| || Sbjct 658 ATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCGGAACACAACATCCTTATGCATCC 599 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 || || ||| | || ||||| ||||| || ||||| || || |||||||| ||||| || Sbjct 598 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 539 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| |||| |||||| || | | |||||||| |||||||| || || || Sbjct 538 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGCGGG 479 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 ||||| ||||||||||| ||||| || || || ||||| ||||| || || || || || Sbjct 478 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGG 419 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 || |||| |||||||| ||| |||||||| || || || | || |||||| | || Sbjct 418 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCCTTACATTTCTTCTTGGC 359 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 |||||||||||| || || |||||||||||||| | || | || || ||||| ||||| Sbjct 358 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 299 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 ||| ||||||||||| |||||||| ||| | ||||| ||||||||| ||||||||||| Sbjct 298 CCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGACAGTCAGGGTCGTGTTATCAACAC 239 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 ||||| || | |||| |||||| ||||| |||||||| ||||| || || ||||| Sbjct 238 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGC 179 Query 161835 TCACAACTTCCCTCTTGACCTTGCTGCTG 161863 ||||||||||||||| ||||| ||||||| Sbjct 178 TCACAACTTCCCTCTAGACCTAGCTGCTG 150 Score = 558 bits (618), Expect = 4e-154 Identities = 721/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 || ||||||||||||||||| ||||||||||| || | || ||||| ||||||| | Sbjct 33103 AGGGACCGTTTCGTTTTTGTAGGCTGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTC 33162 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 162263 ||| | || |||||| |||| || || ||||| || || |||||||| || ||| | Sbjct 33163 GCTTTAGGAGGTTGGTTTACAGGTACAACTTTTGTAACTTCATGGTATACCCATGGATTG 33222 Query 162264 GCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAGTTTCTACTCCAGCAG 162321 || ||||||||| | | ||| ||||| |||||| || || |||||||| ||||| || Sbjct 33223 GCCAGTTCCTATTTGGAAGGTTGCAA--TTTCTTGACCGCTGCAGTTTCCACTCCTGCGA 33280 Query 162322 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 162381 | | | | ||||| | |||| |||||||| |||||| | |||||||| || | | Sbjct 33281 ATAGTTTAGCACATTCCTTGTTGCTACTATGGGGCCCTGAGGCACAAGGGGATTTTACTC 33340 Query 162382 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 162441 | ||||| ||| | || || || ||||||||||| || ||||| || | || | ||| | Sbjct 33341 GTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGTTTTCGGACTAA 33400 Query 162442 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTATT-CGTCCTTACAAT 162500 ||||||| ||| | || || || ||||| || ||| | | | ||| || ||||| ||| Sbjct 33401 TAGGTTTTATGTTACGTCAATTCGAACTTGCTCGATCTGT-GCAATTGCGACCTTATAAT 33459 Query 162501 GCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTG 162560 || || || ||||| | ||| |||||||| || ||| ||| || || || ||||| || Sbjct 33460 GCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTG 33519 Query 162561 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 162620 || ||||| |||||||| || || || || || ||||| || || |||||| | Sbjct 33520 GGTCAATCTGGTTGGTTCTTTGCGCCCAGTTTTGGCGTAGCAGCTATATTTCGATTCATC 33579 Query 162621 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCA 162680 |||||| |||||||||| ||||| |||||| | || || ||||| |||||||| || || Sbjct 33580 CTCTTCTTCCAAGGGTTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 33639 Query 162681 GGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTG 162740 || | | || | ||| |||| | ||||||||||| | || || |||||||| | Sbjct 33640 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTA 33699 Query 162741 TACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAA 162800 | ||||||||| || ||||| || || || ||| || | || || | ||||| Sbjct 33700 TTCGAAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAG 33759 Query 162801 ACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGT 162860 || ||||| ||||| ||||| |||||||| ||||| || || || || |||||||| Sbjct 33760 ACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCC 33819 Query 162861 AACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACAAGT 162920 || || |||||||| |||||||||||||| ||||| || || | ||| | |||| ||| Sbjct 33820 AATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGGTTTATGGATGAGT 33879 Query 162921 TCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAAGAA 162980 || | || | | || || ||||| || || ||||| || ||||| || || |||||| Sbjct 33880 GCTCTTGGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCCTATGACTTCGTTTCCCAAGAA 33939 Query 162981 GTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAAT 163040 | ||||| || ||||| ||||| |||||||| ||||| || || || || || | || Sbjct 33940 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTCTTAAAC 33999 Query 163041 GAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCT 163100 ||||| |||| || ||| | || | ||| || |||||||| ||| || | |||||| Sbjct 34000 GAAGGTATTCGTGCTTGGATGGCGGCTCAGGATCAGCCTCATGAAAACCTTATATTCCCT 34059 Query 163101 GAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || ||||| | || | || |||||||| Sbjct 34060 GAGGAGGTTCTACCCCGTGGAAACGCTCT 34088 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 67416 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 67357 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 67356 CCTGTCATCCCTACCTAT 67339 >seq1 Length=68435666 Score = 167 bits (184), Expect = 3e-36 Identities = 204/277 (74%), Gaps = 1/277 (0%) Strand=Plus/Plus Query 161587 TACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTC 161646 || || || || |||| ||| |||| || |||||||| || | | | || ||| Sbjct 3686464 TATTTTGGCCGATTGATCTTCTAATATACTAGTTTCAACAATTCTCATTTCTTACATTTC 3686523 Query 161647 TTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATG 161706 ||| | |||| ||||||||| || | |||||||||||||| | | | || || ||| Sbjct 3686524 TTCTTGGCTGTTTGGCCTGTAGTAAGTATCTGGTTCACTGCTTTAAGTATTAGTACTATG 3686583 Query 161707 GCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTT 161766 | || ||||| |||| |||||| |||||||| ||| | ||||| ||||| || ||| Sbjct 3686584 ACTTTTAACCTAAATGATTTCAA-TTCAACCAATCTGTAGTTGACCGTCAGAGTTGTGTT 3686642 Query 161767 ATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAG 161826 ||||| || ||| | || | |||| | ||| |||||| |||||||| ||||| || Sbjct 3686643 ATCAATACTTGGACTGATATCATCAATTGCGCTAATCTTGGTATGGAAGTAATGCATGAA 3686702 Query 161827 CGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCTG 161863 || ||||||||||||||| |||| ||||| ||||||| Sbjct 3686703 CGTAATGCTCACAACTTCTCTCTAGACCTAGCTGCTG 3686739 Score = 158 bits (174), Expect = 1e-33 Identities = 408/622 (66%), Gaps = 30/622 (5%) Strand=Plus/Plus Query 161234 GTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 161293 ||||||| |||| || ||||||| || ||||| || ||||||| || || || | || Sbjct 30149770 GTCTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTG 30149829 Query 161294 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 161353 | | ||| || ||| ||| | |||||||| |||||||||| |||||| Sbjct 30149830 CTATTTTCTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCCT------- 30149879 Query 161354 TCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACC 161413 | ||| || ||| || || || ||||||| ||| |||| | Sbjct 30149880 ------------TGAACAAC-----TGTATTTTAAATGGATTACAACATCCTCGTGCATC 30149922 Query 161414 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGG-TTCTCTGTTCAGTGCAATGCAC 161472 | | || ||| | || | ||| |||| | | || |||| | |||||||| || | Sbjct 30149923 CATCTCACATGTTGGGTGGAGCCGGTGAATATAGCAACTTCT-TATTCAGTGCTATCAAT 30149981 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| ||| |||| | | || | |||||||| |||| ||||| || | Sbjct 30149982 GGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAA 30150041 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||||| ||| |||||| ||| || || | || || || | |||||| || | || Sbjct 30150042 GGTTACAGATTCAGTCAAGTAGACGAAACTCATAATATTGTAGGTGCCCATGGTTTATTT 30150101 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTG-CACTTCTTCCT 161651 || | | || | | ||| ||| |||||||| || | || | || || || | Sbjct 30150102 GGCAGATTTATCTCACGATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTT 30150161 Query 161652 TGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 161711 |||||||||| || || || |||| ||| |||| | | | || || ||| | || Sbjct 30150162 GGCTGCTTGGCTTGCAGTCGGTATCTAGTTACCTGCTTTACGTATCAGTACTATGACTTT 30150221 Query 161712 CAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAA 161771 ||||| ||||||||||| | |||||| ||| || || | ||||||| | ||||| | Sbjct 30150222 TAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAATCAGGGTTATGTTATTAC 30150281 Query 161772 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAA 161831 || || | | || | |||| | || | ||| |||||||| ||| | || | || Sbjct 30150282 CATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATGTATGAATGTAA 30150341 Query 161832 TGCTCACAACTTCCCTCTTGAC 161853 |||||||||||||||||| ||| Sbjct 30150342 TGCTCACAACTTCCCTCTAGAC 30150363 >seq14 Length=24379743 Score = 141 bits (156), Expect = 1e-28 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 162501 GCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCTTTG 162560 || ||||| ||||| | ||| |||||||| || ||| | | || || || ||||| ||| Sbjct 16929123 GCAATTGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTATATTCCTGATTTATCCATTG 16929182 Query 162561 GGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 162620 || | ||| |||||||| || || || || || ||| | || || | |||| | Sbjct 16929183 GGTCGATCTGGTTGGTTCTTTGCGCCCAATTTTGGTGTAGCAACTATATTTCTATTCATC 16929242 Query 162621 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCA 162680 || || ||||| |||| |||| |||||| | || || ||||| |||||||| || || Sbjct 16929243 CTTTTTTTCCAAAGGTTTTATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCT 16929302 Query 162681 GGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTG 162740 || | | || | ||| |||| | ||||||||||| | || || ||||||| | Sbjct 16929303 GGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATATTTTA 16929362 Query 162741 TACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAA 162800 | ||||||||| || ||||| || || | || ||| || | || || | ||||| Sbjct 16929363 TTCGAAGATGGTGACGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAG 16929422 Query 162801 ACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTT 162856 || ||| ||||| ||| | || ||| ||||| || || || | ||||||| Sbjct 16929423 ACTTATGTAATGGTCACTACTCACTACTTTTGGTCCCAAATCTTTGAGGTTGCTTT 16929478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547472908742760