Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq40061 520 3e-143 seq1 102 2e-17 >seq40061 Length=156973 Score = 520 bits (576), Expect = 3e-143 Identities = 715/985 (73%), Gaps = 16/985 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||| ||||| | |||||||| Sbjct 154 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTT 213 Query 17894 AGCTCTGTTGAGTACGTCAGCCCA--TGTAGGTACGACTTGTCCTCCAGCTG-CTACAAT 17950 ||| | |||| | |||||||| ||| | || || | || | ||| | || | Sbjct 214 AGCACGATTGATGATATCAGCCCAAGTGTTGATAACAC--GACCCTGA-CTGTCAACTAC 270 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || ||||||||||| || || | || || Sbjct 271 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGT 330 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||||||||||||||||| | |||||| Sbjct 331 GAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGTT 390 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 391 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATA 450 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || || ||| || ||||| ||||| Sbjct 451 AGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTTC 510 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 511 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCC 567 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| |||||||| || || Sbjct 568 GAATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTG 627 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | |||||| ||||||||||| || || | ||||||||||||||||||||| Sbjct 628 GAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 687 Query 18368 CCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| ||| || | | ||||| || | || | |||||||| || || || ||| Sbjct 688 TCCTTGACCAATAGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 745 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| || |||||||| || | ||||||||||||| | || ||| Sbjct 746 TATGCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCC 805 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 |||||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 806 ATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 865 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 ||||||||||| || | | ||| |||||||| || || || || || | |||||| || Sbjct 866 TATAACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGCT 925 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | ||| | || || || || || || ||||||||||| |||| | || || Sbjct 926 GCAGAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAA 985 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 || || |||||||||||||| || || || ||||||||||||| || || || | ||| Sbjct 986 ACTGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAAT 1045 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || |||||| || | | ||||||||| | || || ||||| || | ||| || Sbjct 1046 ACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGA 1105 Query 18786 CGGTTGTTTGTACTCGTAACCCAGT 18810 ||||| | || || || | ||||| Sbjct 1106 CGGTTTTCAGTGCTGGTTATCCAGT 1130 >seq1 Length=68435666 Score = 102 bits (112), Expect = 2e-17 Identities = 193/277 (70%), Gaps = 9/277 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| | |||||| ||||||||||| || ||||| ||||| | ||||| || Sbjct 3686735 AGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGATT 3686676 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTA--GGTACGACTTGTCCTCCAG-CTGCTACAAT 17950 ||| | |||| | |||| ||| ||| | || || || | | | ||||| Sbjct 3686675 AGCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTACA-- 3686618 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| |||| || ||||||| |||||| || | | || || Sbjct 3686617 -GATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAGT 3686560 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTG-CTATTGT 18069 | ||| || | || |||||| |||||||||||||||||| | || ||||| Sbjct 3686559 GAACCAGATACTTACTACAGGCCAAACAGCCAAGAAGAAATGTA-AGAAATGAGAATTGT 3686501 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTA 18106 | || |||| ||| | |||||| | || ||||| || Sbjct 3686500 TGAAACTAGTATATTAGAAGATCAATCGGCCAAAATA 3686464 Score = 93.3 bits (102), Expect = 1e-14 Identities = 243/363 (67%), Gaps = 7/363 (2%) Strand=Plus/Minus Query 17832 GAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGG 17891 || |||| ||||| |||||||| |||||||||| || | ||| ||||| | ||| Sbjct 30150371 GATGCTATGTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAAC 30150312 Query 17892 TTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATG 17951 ||| | |||| | |||| | | | | | || | || | ||||| | Sbjct 30150311 TTACCATGATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTA 30150252 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAG-AGGT 18010 | ||||||| | ||||| ||||| || ||||||| |||||| ||| | | || |||| Sbjct 30150251 GTTTGGTTGGAATTGAAACCATTTAGGTTAAAAGTCATAGTACTGATACGTAAAGCAGGT 30150192 Query 18011 AAGCCATATGCA-AGTGACGGGCCAAGCAGCCAAGAAGAAATGT--AGACTCCTGCTATT 18067 || | | || | | || | ||||||||||||| || |||||| || | | ||| Sbjct 30150191 AA-CTAGATACCGACTG-CAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAG-AATT 30150135 Query 18068 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATT 18127 ||| || |||||||| | |||| | ||| ||||| | ||||| || | |||||||| Sbjct 30150134 GTTGAAACTAGCATATCGTGAGATAAATCTGCCAAATAAACCATGGGCACCTACAATATT 30150075 Query 18128 ATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGT 18187 || || || ||| |||| | ||| | || || | || ||||||| | ||| || Sbjct 30150074 ATGAGTTTCGTCTACTTGACTGAATCTGTAACCTTCATTAGTAGACTCATTTTTAGTGGT 30150015 Query 18188 TTC 18190 ||| Sbjct 30150014 TTC 30150012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151246414148734