Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20guineensis_20[refseq_20GCF_5F000442705.1_202013-08-13] 40,061 sequences; 1,535,178,229 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq40061 578 5e-160 seq14 167 3e-36 seq1239 136 5e-27 seq1 127 3e-24 seq357 89.7 7e-13 >seq40061 Length=156973 Score = 578 bits (640), Expect = 5e-160 Identities = 734/1011 (73%), Gaps = 9/1011 (1%) Strand=Plus/Plus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || |||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 150 CAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 209 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 | ||| || |||| | || ||||| ||||| | ||||||||||||| |||| | Sbjct 210 GGTTAGCACGATTGATGATATCAGCCCAAGTGTTGATAACACGACCCTGACTGTCAACTA 269 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| || || |||||||| ||||| || |||| ||| | || | Sbjct 270 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAG 329 Query 103350 TGAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGT 103409 ||||||||||||| ||||| || | || |||| Sbjct 330 TGAACCAGATACCTACTACAGGCCAAGCAGCCAAGAAGAAATGTAAGGAACGAGAATTGT 389 Query 103410 TGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGT 103469 |||| || |||||||||||||| || || || ||||||||||| |||||||| || | Sbjct 390 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTAT 449 Query 103470 ATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCT 103529 | || ||||||||||| ||||| ||||||| || |||||| ||||||| || | Sbjct 450 AAGTTTCTTCCTCTTGACCGAATCTGTAACCCGCATTAGCAGATTCGTTTTCAGTGGTTT 509 Query 103530 CAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCG 103588 | | || | | | | || || || | ||||| |||||||||||||| || || || ||| Sbjct 510 CCCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCG 568 Query 103589 AAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGG 103648 || || ||||| || |||| |||||| || || ||||| || ||||| ||||| || ||| Sbjct 569 AATACACCAGCTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCGCCTGG 628 Query 103649 AAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAA 103708 || || | |||| ||||||| || || || || || ||||||||| |||| ||||| Sbjct 629 AATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTT 688 Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 |||||||||| ||||||| |||||| || || | ||||| ||||||||||| || ||| Sbjct 689 CCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATAT 748 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATA 103828 || ||| ||||| || ||||| ||||| ||| | | |||||||||||| ||||| Sbjct 749 GCAACAGCAATCCAAGGACGCATACCCAGGCGGAAACTAAGTTCCCACTCACGACCCATG 808 Query 103829 TATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATAC 103888 || | | |||| | |||||| | || | || | ||||||| || || || Sbjct 809 TAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTAT 868 Query 103889 AGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTG 103948 | ||||||||||| |||||| |||||||| || ||||| || || | ||| || || || Sbjct 869 AACCACTCATCAACAGATGCCGCTTCCCATATCGGATAAAAATGCAAACCGATAGC--TG 926 Query 103949 GAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGA 104006 || || |||| || ||||||||||| || ||||| || || | || ||||||| | Sbjct 927 CAGAAGTCGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAGAGAACCAGAAA 986 Query 104007 CGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-G 104065 | ||||||||||| || || ||||| || ||||| || || | ||| || | ||||| Sbjct 987 CTGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATGAATA 1046 Query 104066 CAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGA 104125 |||| ||||| | ||| | || |||||||||| ||||||||||| |||| || ||| Sbjct 1047 CAGA-AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCAATGTAAAGA 1105 Query 104126 CGGTTGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 ||||| | || || | ||| | ||||||| | |||| ||| |||| Sbjct 1106 CGGTTTTCAGTGCTGGTTATCCAGTTGCAGAAGCGACCCCA-TAGGCTTGT 1155 Score = 549 bits (608), Expect = 2e-151 Identities = 734/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 34088 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCC 34029 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || ||||| || || |||||||| ||| Sbjct 34028 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGGATATTTTTGGTGTAGAAAGTC 33969 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| |||||||| || |||||||| ||||| ||| Sbjct 33968 TCAAATTCAGGATCTTCCGCTGCACGGATTTCTTGGGAAACGAAGTCATAGGCACGGAGG 33909 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || || | | || | | ||| |||| | ||| | || || ||||| Sbjct 33908 TTCAGAGCCAGGCCGACTACCCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 33849 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 33848 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 33789 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||||||||| |||| || | | || || | Sbjct 33788 AAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 33729 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||| | | ||| || || || || |||| || || Sbjct 33728 AATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTACGGTAGCACCATGAATA 33669 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| |||||||| | | Sbjct 33668 GCGCATAGCAGAGCAGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 33609 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | |||||| | ||||| |||||| ||||| || ||||| Sbjct 33608 GTCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCGAAATATAGCTGCTACGCCAAAA 33549 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 ||||||||||||||||| || || || || ||||| || || || ||| |||||| Sbjct 33548 CTGGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATCAGGAATACAGAAACAAAA 33489 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAGC 102368 ||||| || || ||||||| || || ||||| || || || |||| || | | ||| Sbjct 33488 ACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGCACAGATCG-AGC 33430 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | ||||||||||| | ||| ||||| || || | || |||| |||||||| ||||| Sbjct 33429 AAGTTCGAATTGACGTAACATAAAACCTATTAGTCCGAAAACACCATGGAGAGCAACAAA 33370 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 || ||| || || || | ||| ||| | ||||| ||||| || ||||| ||||| Sbjct 33369 AGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCCTCAGGGCCCCA 33310 Query 102489 AAGTAG-AAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGA 102547 ||||| || ||| ||||| | | | | ||||| || || || ||||| || | || Sbjct 33309 TAGTAGCAACAAG-GAATGTGCTAAACTATTCGCAGGAGTGGAAACTGCAGCGGTCAAGA 33251 Query 102548 AATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACG 102607 |||| |||||| | || | || | || ||||||||||| ||||| |||| | Sbjct 33250 AATTGCAACCTTCCAAATAGGAACTGGCCAATCCATGGGTATACCATGAAGTTACAAAAG 33191 Query 102608 TCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAG 102667 | || || |||| ||| || || | |||| ||||||| ||||| || | ||| |||| Sbjct 33190 TTGTACCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCAG 33131 Query 102668 ACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||| || ||||| || || || || | | ||| ||||||| || ||||| Sbjct 33130 ACCAGCCTACAAAAACGAAACGGTCCCTCCGTAACCAATCATCCATAATATCAAA 33076 >seq14 Length=24379743 Score = 167 bits (184), Expect = 3e-36 Identities = 256/364 (70%), Gaps = 1/364 (0%) Strand=Plus/Minus Query 101975 TATTACTAAATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAAT 102034 || || |||| |||| |||||||||| ||||| || || | || |||||| || Sbjct 16929485 TAATATTAAA-GCAACCTCAAAGATTTGGGACCAAAAGTAGTGAGTAGTGACCATTACAT 16929427 Query 102035 AAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTT 102094 |||||||||| |||| || | | || || | ||| || ||||| |||||||||| Sbjct 16929426 AAGTCTCTTCAGCTTGAGTTGGGTTAAAAGCATGGAATGTATTTGCACCGTCACCATCTT 16929367 Query 102095 CATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGA 102154 | | | | | || || || || |||| || || || | ||||| || | || | | Sbjct 16929366 CGAATAAAATATTTTCTACGGTAGCACCATGAATAGCGCATAGCAGAGCAGCGCCTAATA 16929307 Query 102155 TACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGA 102214 || ||||| ||||||||||| |||||||| | |||||| |||| || | || | | Sbjct 16929306 CTCCAGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATAAAACCTTTGGAAAA 16929247 Query 102215 AGAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACT 102274 | || | |||| |||||| | ||| |||||||| ||||||||||||||||| || Sbjct 16929246 AAAGGATGAATAGAAATATAGTTGCTACACCAAAATTGGGCGCAAAGAACCAACCAGATC 16929187 Query 102275 GTCCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAA 102334 | || | ||||| || || || | | ||||||||||| || || ||||||| |||| Sbjct 16929186 GACCCAATGGATAAATCAGGAATATAGAAACAAAAACAGCAATTGGAGCAGAGAATGCAA 16929127 Query 102335 TAGC 102338 | || Sbjct 16929126 TTGC 16929123 >seq1239 Length=80461 Score = 136 bits (150), Expect = 5e-27 Identities = 200/280 (71%), Gaps = 11/280 (4%) Strand=Plus/Minus Query 102157 CCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAG 102216 || ||||| ||| ||| ||| |||||||| | | |||| ||||| || || || | |||| Sbjct 69413 CCGGCAACTCCCGTCAAATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAG 69354 Query 102217 AGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGT 102276 || | ||||| |||||| ||||||||||| ||| |||||||||||||| || || Sbjct 69353 AGGATGAATCAAAATATAGCTGCAACACC-----TGGGTGCAAAGAACCAACTAGATTGA 69299 Query 102277 CCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATA 102336 || || ||||| |||| || || ||||||| ||| || || ||||||| || || Sbjct 69298 CCCAGTGGATAAATGAAGAATACGGAAACAAAAATAGCAATTGGAACAGAGAATGCGATT 69239 Query 102337 GCATTGTACGG--ACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAAC 102394 ||||| || | || |||| | | || | ||| | ||||| ||| | | |||| Sbjct 69238 GCATTATAAAGTCACAAATTGC-ACAAATCAAGCAGGTTTGAATTAACGTAATGTAAAAC 69180 Query 102395 CAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCA 102434 | || || | |||| |||||||| ||||||||||| Sbjct 69179 CTATTAGTCTGA---CACCATGGAGAGCAACAAAAGCCCA 69143 >seq1 Length=68435666 Score = 127 bits (140), Expect = 3e-24 Identities = 150/202 (74%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 103170 CAGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCA 103229 ||||||| ||||| || | |||||||||||| ||||| || ||||| ||||||||||| | Sbjct 3686739 CAGCAGCTAGGTCTAGAGAGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAA 3686680 Query 103230 GACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGA 103289 || ||||| |||| | || | ||| || || | |||| || ||||| |||| | Sbjct 3686679 GATTAGCGCAATTGATGATATCAGTCCAAGTATTGATAACACAACTCTGACGGTCAACTA 3686620 Query 103290 TGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGG 103349 || |||||||| ||||| | || ||||| || | ||| || |||| || | || | Sbjct 3686619 CAGATTGGTTGAA-TTGAAATCATTTAGGTTAAAAGTCATAGTACTAATACTTAAAGCAG 3686561 Query 103350 TGAACCAGATACCCACTACTGG 103371 |||||||||||| ||||| || Sbjct 3686560 TGAACCAGATACTTACTACAGG 3686539 >seq357 Length=580603 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 101806 AGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGG 101865 || || || || |||||||| ||||| || || |||||||||||||| ||| |||||| Sbjct 527614 AGAATATTTTTGGTGTAGAAAGTCTCAAATTCAGGATCTTCTGCTGCATGGATTTCTTGG 527673 Query 101866 GATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCA 101904 || | |||||||| ||||| ||||| ||||| || ||| Sbjct 527674 GAAATGAAGTCATAGGCACGGAGGTTCAGAGCCAGGCCA 527712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633196360145880